View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8720_high_1 (Length: 386)
Name: NF8720_high_1
Description: NF8720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8720_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 50 - 386
Target Start/End: Complemental strand, 21297512 - 21297176
Alignment:
| Q |
50 |
agaattgtttgcaccgtttcaacagttgatttcccgtcttctatatcaccacaccagtaacatatgtataaccaaccagcttgcattcacattgcttttc |
149 |
Q |
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| T |
21297512 |
agaattgttcgcaccgtttcaacagttgatttcccgtcttctatatcaccacaccagtaacatatgtataaccaaccagcttgcattcacattgcttttc |
21297413 |
T |
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| Q |
150 |
aagtgcaggaaatagtataccatactttatagtacctcttatgtatctcaggattctcttagttgcaaccatatgagaagtttttggcctctccataaat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21297412 |
aagtgcaggaaatagtataccatactttatagtacctcttatgtatctcaggattctcttagttgcaaccatatgagaagtttttggcctctccatgaat |
21297313 |
T |
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| Q |
250 |
ttgcttactattccaacattataggctaggtcaggtcttgtgttacacaagtacctcaatgatcctacgagtcttctaaaaaatgtagcatcaatagcct |
349 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21297312 |
ttgcttactattccaacactataggctaggtcaggtcttgtgttacacaagtacctcaatgatcctacgagtcttctaaaaaatgtagcatcaatagcct |
21297213 |
T |
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| Q |
350 |
tctaatcggtgtctcttgacagttacaatatgggctc |
386 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
21297212 |
tctaatcggtgtctcttgacagttacaatatgggctc |
21297176 |
T |
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