View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8720_high_3 (Length: 329)
Name: NF8720_high_3
Description: NF8720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8720_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 9544468 - 9544164
Alignment:
| Q |
1 |
ggttattacaattctaacatatcgtttgtagacgccgtataaaaatacactcggaataactattcctgtgacaagaagctggtaattgagggccttaata |
100 |
Q |
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| T |
9544468 |
ggttattacaattctaacatatcgtttgtagacgccgtataaaaatac--tcggaataactattcctgtgacaagaagctggtaattgagggccttga-- |
9544373 |
T |
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| Q |
101 |
aaaaataatgcaaattaacatccattgctattggtatgtgctatagatgcagtgtcacgcagcagtttcacctccctcttcaaaaatgctggtaaagcaa |
200 |
Q |
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| T |
9544372 |
-aaaataatgcaaattaacatccattgctattggtatgtgctatagatgcagtgtcacgcagcagttttacctccctcttcaaaaatgctggtaaagcaa |
9544274 |
T |
|
| Q |
201 |
atgcagctttgtgcatctgcagaaagaaacacaatacattactcttttttatttatttggaaagaaaatgaatttgtagaagcaacattttggaccatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9544273 |
atgcagctttgtgcatctgcagaaagaaacacaatacattactcttttttatttatttggaaagaaaatgaatttgtagaagcaacattttggaccatat |
9544174 |
T |
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| Q |
301 |
atattcacta |
310 |
Q |
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|||||||||| |
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| T |
9544173 |
atattcacta |
9544164 |
T |
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