View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8720_high_6 (Length: 261)
Name: NF8720_high_6
Description: NF8720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8720_high_6 |
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| [»] scaffold0740 (2 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0740 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: scaffold0740
Description:
Target: scaffold0740; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 49 - 259
Target Start/End: Original strand, 1268 - 1478
Alignment:
| Q |
49 |
gtcaccagaactcctctgactacgtgtggttaccatctacgataacccatccggcgaaacccggatcctgcttgggacacgaattattaaactttattta |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1268 |
gtcaccagaactcctctgactacgtgtggttaccatctacaataacccatccggcgaaacccggattctgcttgggacacgaattattaaactttattta |
1367 |
T |
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| Q |
149 |
aaacattcgggatttgccttttaactggagttcttatgctacccaggtttgccccgctctgtttcaatgaaacattccggatttgccttttaacgggggt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||| ||||| |
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| T |
1368 |
aaacattcgggatttgccttttaactggagttcttatgctacccaggtttgccctgctccgtttcaatgaaacattcaggattttccttttaactggggt |
1467 |
T |
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| Q |
249 |
tcttaagttac |
259 |
Q |
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||||||||||| |
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| T |
1468 |
tcttaagttac |
1478 |
T |
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Target: scaffold0740; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 1437 - 1490
Alignment:
| Q |
149 |
aaacattcgggatttgccttttaactggagttcttatgctacccaggtttgccc |
202 |
Q |
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| T |
1437 |
aaacattcaggattttccttttaactggggttcttaagttacccaggtttgccc |
1490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 17303770 - 17303678
Alignment:
| Q |
149 |
aaacattcgggatttgccttttaactggagttcttatgctacccaggtttgccccgctctgtttcaatgaaacattccggatttgccttttaa |
241 |
Q |
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| T |
17303770 |
aaacattaaggatttgccttttaactggggttctaatgttacccaggtttgccccgctctctttcaatgaaacattcaggattttccttttaa |
17303678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 21100978 - 21101043
Alignment:
| Q |
149 |
aaacattcgggatttgccttttaactggagttcttatgctacccaggtttgccccgctctgtttca |
214 |
Q |
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| T |
21100978 |
aaacattcaggatttgccttttaagtgaggttcttatgttacccaggtttgccccgctccgtttca |
21101043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 21100832 - 21100888
Alignment:
| Q |
14 |
cactattatctggtgaaaattcctatctgaagctagtcaccagaactcctctgacta |
70 |
Q |
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| T |
21100832 |
cactataatctggtgaaaattcctatcttaggctagtcaccagaactcctctaacta |
21100888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 17303901 - 17303857
Alignment:
| Q |
21 |
atctggtgaaaattcctatctgaagctagtcaccagaactcctct |
65 |
Q |
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| T |
17303901 |
atctggtgaaaattcctatctgaggctaatcaccagaagtcctct |
17303857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 1455328 - 1455393
Alignment:
| Q |
149 |
aaacattcgggatttgccttttaactggagttcttatgctacccaggtttgccccgctctgtttca |
214 |
Q |
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| T |
1455328 |
aaacattcaggatttaccttttaactggggttctaatgttacccaggtttgccccgctccgtttca |
1455393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 1455200 - 1455245
Alignment:
| Q |
20 |
tatctggtgaaaattcctatctgaagctagtcaccagaactcctct |
65 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
1455200 |
tatctggtgaaaattcctatctgaggctaatcaccagaactcctct |
1455245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 20920094 - 20920027
Alignment:
| Q |
27 |
tgaaaattcctatctgaagctagtcaccagaactcctctgactacgtgtgg-ttaccatctacgataa |
93 |
Q |
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| T |
20920094 |
tgaaaactcctatctgaggctaatcaccggaattcctctgactacgtgtggtttaccatctatgataa |
20920027 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 23696120 - 23696047
Alignment:
| Q |
20 |
tatctggtgaaaattcctatctgaagctagtcaccagaactcctctgactacgtgtgg-ttaccatctacgataa |
93 |
Q |
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| T |
23696120 |
tatctggtgaaact-cctatataaggctaatcaccataactcctctgactacgtgtggtttaccatctatgataa |
23696047 |
T |
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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 36488 - 36568
Alignment:
| Q |
14 |
cactattatctggtgaaaattcctatctgaagctagtcaccagaactcctctgactacgtgtgg-ttaccatctacgataa |
93 |
Q |
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|||| ||||| | |||||| |||| ||||| |||||||| ||||||||||||||| || ||| |||||||||||||||| |
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| T |
36488 |
cactgttatccgatgaaaactcctgtctgaggctagtcattggaactcctctgactatgtatggtttaccatctacgataa |
36568 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 14803239 - 14803159
Alignment:
| Q |
14 |
cactattatctggtgaaaattcctatctgaagctagtcaccagaactcctctgactacgtgtgg-ttaccatctacgataa |
93 |
Q |
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| T |
14803239 |
cactgttatccgatgaaaactcctgtctgaggctagtcattggaactcctctgactatgtatggtttaccatctacgataa |
14803159 |
T |
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