View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8720_low_1 (Length: 399)
Name: NF8720_low_1
Description: NF8720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8720_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 26653165 - 26652854
Alignment:
| Q |
18 |
aaaatatacattcatgttggtgtgttagccacacctccgtgtttgctattaagttgttttcttggaatgttgagcttcttcatagtatctt-ctaatgct |
116 |
Q |
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| T |
26653165 |
aaaatatccattcatgttggtgtgttagccacacctccgtgtttgctattaagttgttttcttgcaatgttgagcttcttcatagtatatttctaatgct |
26653066 |
T |
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| Q |
117 |
tgttcattcatcatgggtataacactcaactttcaaaacaaaaatggttacattgcttaatttggaaaggctacgttattggccacaaaaattgtactac |
216 |
Q |
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| T |
26653065 |
tgttcattcatcatgggtataacactcaactttcaaaacaaaaatggttactttgcttaatttggaaaggctacgttgttggccacaaaaattgtactac |
26652966 |
T |
|
| Q |
217 |
agtgtataccaagggaaaatgaatggtgaatgtgtgaaaaccccaatgtatcctttgttgctagtaattctcacattaaagaaggtgccatttcaattaa |
316 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
26652965 |
agtgtatacgaagggagaatgaatggtgaatgtgtgaaaaccccaatgtatcctttgttgctagtaattctcacattaaacaaggtgccatttgaattaa |
26652866 |
T |
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| Q |
317 |
gtttaggggcaa |
328 |
Q |
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| T |
26652865 |
gtttaggggcaa |
26652854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 26646277 - 26646193
Alignment:
| Q |
244 |
gaatgtgtgaaaaccccaatgtatcctttgttgctagtaattctcacattaaagaaggtgccatttcaattaagtttaggggcaa |
328 |
Q |
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| T |
26646277 |
gaatgtgtgaaaacccagatgtatcctttgcttctagtaattttcaaaacaaacaatgtgccattttaattaagtttaggggcaa |
26646193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 26646459 - 26646345
Alignment:
| Q |
99 |
atagtatcttctaatgcttgttcattcatcatgggtataacactcaacttt-caaaacaaaaatggttacattgcttaatttggaaaggctacgttattg |
197 |
Q |
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||||||||||| |||| ||||||||||||||||||||| ||||||| |||| |||| ||||||||||| ||| |||| |||||||||||| ||| |
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| T |
26646459 |
atagtatcttccaatgtttgttcattcatcatgggtatcacactcagctttaaaaaaaaaaaatggtta-----ctttctttgcaaaggctacgttgttg |
26646365 |
T |
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| Q |
198 |
gccacaaaaattgtactaca |
217 |
Q |
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|| |||||| ||||| |||| |
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| T |
26646364 |
gcaacaaaatttgtagtaca |
26646345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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