View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8720_low_3 (Length: 331)
Name: NF8720_low_3
Description: NF8720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8720_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 7537444 - 7537745
Alignment:
| Q |
19 |
cctaccatactacaatggttcattgatatattatattgtgtgacgaaaaaatgcattgatatattatattgcgtgaagaaaataatgtaaaacctcttcg |
118 |
Q |
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| T |
7537444 |
cctaccatactacaatggttcattgatatattatattgtgtgacgaaaaaatgcattgatatattatattgcgtgaagaaaataatgtaaaacctcttcg |
7537543 |
T |
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| Q |
119 |
ttggccaatccatagggggagaagaacccatttaattagatcgagtagtgacatggtttacgttacaaactctnnnnnnnctcgaggccatacatttact |
218 |
Q |
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| T |
7537544 |
ttggccaatccatagggggagaagaacccatttaattagatcgagtagtgacatggtttacgttacaaactctaaaaaaactcgaggccatacatttact |
7537643 |
T |
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| Q |
219 |
ttcactttaaatattcacccaacaataatggcgctcgagacaaataatttcattgacaacaataatggatcactatgtggaatcaatttgtaataacttc |
318 |
Q |
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| T |
7537644 |
ttcactttaaatattcacccaacaataatggcgctcgagacaaataatttcattgacaacaataatggatcactatgtggaatcaatttgtaataacttc |
7537743 |
T |
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| Q |
319 |
tt |
320 |
Q |
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|| |
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| T |
7537744 |
tt |
7537745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 98 - 256
Target Start/End: Complemental strand, 7531469 - 7531311
Alignment:
| Q |
98 |
aaataatgtaaaacctcttcgttggccaatccatagggggagaagaacccatttaattagatcgagtagtgacatggtttacgttacaaactctnnnnnn |
197 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7531469 |
aaatgatgtaaaacctcttcgttggccaatccataggggggggagaacccatttaattagatcgagtagtgacatggtttacgttacaaactctaaaaaa |
7531370 |
T |
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| Q |
198 |
nctcgaggccatacatttactttcactttaaatattcacccaacaataatggcgctcga |
256 |
Q |
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| T |
7531369 |
actcgaggccatacatttactttcactttaaatattcacccaacaataatggcgctcga |
7531311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 159 - 320
Target Start/End: Complemental strand, 7531314 - 7531153
Alignment:
| Q |
159 |
tcgagtagtgacatggtttacgttacaaactctnnnnnnnctcgaggccatacatttactttcactttaaatattcacccaacaataatggcgctcgaga |
258 |
Q |
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|||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7531314 |
tcgaatagtgagatggtttacgttacaaactctaaaaaaactcgaggccatacatttactttcacttttaatattcacccaacaataatggcgctcgaga |
7531215 |
T |
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| Q |
259 |
caaataatttcattgacaacaataatggatcactatgtggaatcaatttgtaataacttctt |
320 |
Q |
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| T |
7531214 |
caaataattgcgttgacaacaataatggatcactatgtggaatcaatttgtaataacttctt |
7531153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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