View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8721_low_1 (Length: 281)

Name: NF8721_low_1
Description: NF8721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8721_low_1
NF8721_low_1
[»] chr1 (9 HSPs)
chr1 (14-264)||(18337595-18337844)
chr1 (11-70)||(13276336-13276395)
chr1 (14-73)||(9955108-9955167)
chr1 (14-68)||(12513283-12513337)
chr1 (14-72)||(21846341-21846399)
chr1 (14-71)||(9352136-9352193)
chr1 (29-70)||(12800669-12800710)
chr1 (13-70)||(14074442-14074499)
chr1 (29-70)||(30619075-30619116)
[»] scaffold0048 (1 HSPs)
scaffold0048 (14-71)||(48861-48918)
[»] chr4 (5 HSPs)
chr4 (14-73)||(7452417-7452476)
chr4 (14-69)||(7044728-7044783)
chr4 (11-71)||(5362033-5362093)
chr4 (17-59)||(9149811-9149853)
chr4 (16-52)||(6347139-6347175)
[»] chr2 (2 HSPs)
chr2 (14-72)||(31238050-31238108)
chr2 (14-73)||(36429845-36429904)
[»] chr6 (10 HSPs)
chr6 (14-70)||(17250057-17250113)
chr6 (14-71)||(7223518-7223575)
chr6 (14-70)||(26053369-26053425)
chr6 (14-70)||(26073422-26073478)
chr6 (14-72)||(6943533-6943591)
chr6 (14-71)||(5422821-5422878)
chr6 (14-59)||(18491110-18491155)
chr6 (14-71)||(30912485-30912542)
chr6 (19-59)||(2912325-2912365)
chr6 (14-70)||(15528183-15528239)
[»] chr5 (6 HSPs)
chr5 (14-72)||(18051603-18051661)
chr5 (11-69)||(23172502-23172560)
chr5 (14-71)||(21059228-21059285)
chr5 (19-70)||(38158332-38158383)
chr5 (14-71)||(22645792-22645849)
chr5 (14-70)||(20923718-20923774)
[»] chr3 (4 HSPs)
chr3 (11-72)||(17796375-17796436)
chr3 (11-72)||(19104815-19104876)
chr3 (14-72)||(28745768-28745826)
chr3 (29-70)||(24649777-24649818)
[»] chr8 (1 HSPs)
chr8 (29-71)||(5922048-5922090)
[»] chr7 (3 HSPs)
chr7 (18-72)||(8630035-8630089)
chr7 (14-70)||(11326386-11326442)
chr7 (14-70)||(44944922-44944978)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 18337595 - 18337844
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatgactccacctcaactaatgctatatttagttgagtcatttaaa 113  Q
    |||||||||||||| |||||| ||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18337595 tgaataaagttgcaaaatcctggattttagg-tataagtcgggattttgacaacaatgactccacctcaactaatgctatattcagttgagtcatttaaa 18337693  T
Q  114 aaagcatttagagttaatacttattacataaataaaagtgaggttattatcaatcaatgactcacaataacagttgtgaactatagtgattagaagttcc 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18337694 aaagcatctagagttaatacttattacataaataaaagtgaggttattatcaatcaatgactcacaataacagttgtgaactatagtgattagaagttcc 18337793  T
Q  214 gtaaaagcaacataaatcaaaatttactatggaatatggaaacaacaaagt 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18337794 gtaaaagcaacataaatcaaaatttactatggaatatggaaacaacaaagt 18337844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 13276336 - 13276395
Alignment:
Q  11 agatgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    ||||||| ||||| ||| |||||||||||||||||||||| |||||||| | ||||||||    
T  13276336 agatgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaat 13276395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 9955108 - 9955167
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatgac 73  Q
    |||| ||||| ||| ||||||| |||||||||||||||| |||||| | |||||||||||    
T  9955108 tgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaatgac 9955167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 12513337 - 12513283
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaaca 68  Q
    |||| ||||| ||| ||||||||||| ||||||||||||||||||| | ||||||    
T  12513337 tgaagaaagtcgcaaaatcctagattgtaggatttaagtcgggattttgacaaca 12513283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 21846341 - 21846399
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatga 72  Q
    |||| ||||| ||| |||||| ||||||||||||||| |||||||| | ||||||||||    
T  21846341 tgaaaaaagtcgcaaaatcctggattttaggatttaactcgggattttgacaacaatga 21846399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 9352136 - 9352193
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatg 71  Q
    |||| ||||| ||| || ||| |||||||||||||||||||||||| | |||||||||    
T  9352136 tgaagaaagtcgcaaaaccctggattttaggatttaagtcgggattttgacaacaatg 9352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 12800669 - 12800710
Alignment:
Q  29 aatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    ||||||| |||||||||||||||| |||||| ||||||||||    
T  12800669 aatcctaaattttaggatttaagttgggattttcacaacaat 12800710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 14074442 - 14074499
Alignment:
Q  13 atgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    ||||| ||||| ||| ||||||| ||||||||||||||| ||||||| | ||||||||    
T  14074442 atgaagaaagtcgcaaaatcctacattttaggatttaagacgggattttgacaacaat 14074499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 30619116 - 30619075
Alignment:
Q  29 aatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    |||||| |||||||||||||||||||||||| | ||||||||    
T  30619116 aatcctggattttaggatttaagtcgggattttgacaacaat 30619075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 48861 - 48918
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatg 71  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||    
T  48861 tgaataaagttgcaaaattctagattttaggatttaagtcggaattttcacaacaatg 48918  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 7452476 - 7452417
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatgac 73  Q
    |||||||||||||| ||| || |||||||| ||||||||||||||| |||||||||||||    
T  7452476 tgaataaagttgcaaaattctggattttagaatttaagtcgggattttcacaacaatgac 7452417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 7044783 - 7044728
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaa 69  Q
    |||||||||||||| |||| | |||||||||||||||||||||||| | |||||||    
T  7044783 tgaataaagttgcaaaatcatggattttaggatttaagtcgggattttgacaacaa 7044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 5362033 - 5362093
Alignment:
Q  11 agatgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatg 71  Q
    ||||||| ||||| ||| ||||||  ||||||||||||||||||||||| | |||||||||    
T  5362033 agatgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaatg 5362093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 9149811 - 9149853
Alignment:
Q  17 ataaagttgcagaatcctagattttaggatttaagtcgggatt 59  Q
    ||||||| ||| ||||||| |||||||||||||||||||||||    
T  9149811 ataaagtcgcaaaatcctaaattttaggatttaagtcgggatt 9149853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 6347139 - 6347175
Alignment:
Q  16 aataaagttgcagaatcctagattttaggatttaagt 52  Q
    |||||||||||| |||||| |||||||||||||||||    
T  6347139 aataaagttgcaaaatcctggattttaggatttaagt 6347175  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 31238050 - 31238108
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatga 72  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  31238050 tgaagaaagtggcaaaatcctagattttaggatttaagtcgggattttgacaacaatga 31238108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 36429904 - 36429845
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatgac 73  Q
    |||| ||||| ||| ||||||||||| |||||||||||| |||||| | |||||||||||    
T  36429904 tgaagaaagtcgcaaaatcctagattataggatttaagttgggattttgacaacaatgac 36429845  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 17250113 - 17250057
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||| | ||||||||    
T  17250113 tgaagaaagttgcaaaatcctggattttaggatttaagtcgggattttaacaacaat 17250057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 7223575 - 7223518
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatg 71  Q
    |||| ||||| ||| ||||||| ||||||||||||||||||||||| | |||||||||    
T  7223575 tgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaatg 7223518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 26053369 - 26053425
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    |||| ||||| ||| |||||||||||||| |||||||||||||||| | ||||||||    
T  26053369 tgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaat 26053425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 26073422 - 26073478
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    |||| ||||| ||| |||||||||||||| |||||||||||||||| | ||||||||    
T  26073422 tgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaat 26073478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 6943533 - 6943591
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatga 72  Q
    |||| ||||| ||| ||||||  ||||||||||||||||||||||| | ||||||||||    
T  6943533 tgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaatga 6943591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 5422821 - 5422878
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatg 71  Q
    |||||||||||||| |||| |  ||||||| ||||||||||||||| | |||||||||    
T  5422821 tgaataaagttgcaaaatcatgaattttagtatttaagtcgggattttgacaacaatg 5422878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 18491110 - 18491155
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggatt 59  Q
    ||||||||| |||| ||| || ||||||||||||||||||||||||    
T  18491110 tgaataaagatgcaaaattctggattttaggatttaagtcgggatt 18491155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 30912485 - 30912542
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatg 71  Q
    |||| ||||| ||| ||||||| |||||||||||||||| |||||| | |||||||||    
T  30912485 tgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaatg 30912542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 2912325 - 2912365
Alignment:
Q  19 aaagttgcagaatcctagattttaggatttaagtcgggatt 59  Q
    ||||||||| ||||||| |||||| ||||||||||||||||    
T  2912325 aaagttgcaaaatcctaaattttaagatttaagtcgggatt 2912365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 15528183 - 15528239
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    |||| ||||| ||| ||||||  ||||||||||||||||||||||| | ||||||||    
T  15528183 tgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 15528239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 18051603 - 18051661
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatga 72  Q
    |||| ||||| ||| ||||||| ||||||||||||||||||||||| | ||||||||||    
T  18051603 tgaagaaagtcgcaaaatcctatattttaggatttaagtcgggattttgacaacaatga 18051661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 23172502 - 23172560
Alignment:
Q  11 agatgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaa 69  Q
    ||||||| ||||| ||| ||||||| ||||||||||||||||||||||| | |||||||    
T  23172502 agatgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaa 23172560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 21059228 - 21059285
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatg 71  Q
    |||| ||||| ||| |||||||||||||||||||||| |||||||| | |||||||||    
T  21059228 tgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaatg 21059285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 38158332 - 38158383
Alignment:
Q  19 aaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    ||||| ||| ||||||||||||||||||||||||||| ||| | ||||||||    
T  38158332 aaagtcgcaaaatcctagattttaggatttaagtcggaattttgacaacaat 38158383  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 22645792 - 22645849
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatg 71  Q
    |||| ||||| ||| ||| || |||||||||||||||||||||||| | |||||||||    
T  22645792 tgaagaaagtcgcaaaatactggattttaggatttaagtcgggattttgacaacaatg 22645849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 20923774 - 20923718
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    |||| ||||| ||| ||| || |||||||||||||||||||||||| | ||||||||    
T  20923774 tgaagaaagtcgcaaaattctggattttaggatttaagtcgggattttgacaacaat 20923718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 17796436 - 17796375
Alignment:
Q  11 agatgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatga 72  Q
    ||||||||||||| | | |||||||||||||| |||||||||||| ||| | ||||||||||    
T  17796436 agatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaatga 17796375  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 19104876 - 19104815
Alignment:
Q  11 agatgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatga 72  Q
    ||||||||||||| | | |||||||||||||| |||||||||||| ||| | ||||||||||    
T  19104876 agatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaatga 19104815  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 28745826 - 28745768
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatga 72  Q
    |||| ||||| ||| ||||||| |||||||||||||| |||||||| | ||||||||||    
T  28745826 tgaagaaagtcgcaaaatcctaaattttaggatttaaatcgggattttgacaacaatga 28745768  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 24649777 - 24649818
Alignment:
Q  29 aatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    |||||||||||||| |||||||||||||||| | ||||||||    
T  24649777 aatcctagattttacgatttaagtcgggattttgacaacaat 24649818  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 5922090 - 5922048
Alignment:
Q  29 aatcctagattttaggatttaagtcgggattatcacaacaatg 71  Q
    |||||| |||||||||||||||||||||||| | |||||||||    
T  5922090 aatcctggattttaggatttaagtcgggattttgacaacaatg 5922048  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 8630035 - 8630089
Alignment:
Q  18 taaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaatga 72  Q
    |||||||||| ||||||||||||| ||| |||||||| |||| | ||||||||||    
T  8630035 taaagttgcaaaatcctagattttgggacttaagtcgcgattttgacaacaatga 8630089  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 11326442 - 11326386
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    |||| ||||| ||| ||||||| |||||||||||||||| |||||| | ||||||||    
T  11326442 tgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaat 11326386  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 44944922 - 44944978
Alignment:
Q  14 tgaataaagttgcagaatcctagattttaggatttaagtcgggattatcacaacaat 70  Q
    |||| ||||| ||| ||||||  ||||||||||||||||||||||| | ||||||||    
T  44944922 tgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 44944978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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