View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8721_low_2 (Length: 245)
Name: NF8721_low_2
Description: NF8721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8721_low_2 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 53219453 - 53219685
Alignment:
| Q |
13 |
gacatcaatgagtgcaaaataacagaacaacaaaagaaaaactactgcacgaatatgataacattttacatgactgtagttgcaaatgattcacaaacct |
112 |
Q |
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| T |
53219453 |
gacatcaatgagtgcaaaataacagaacaacaaaagaaaagctactgcacaaatatgataacattttacatgactgtagttgcaaatgattcacaaacct |
53219552 |
T |
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| Q |
113 |
tcttgaacatgactgtatagtgattatttacacaagttccctcaggaaatatgagaagaggattgttgtcagctccctggacatgttccctcaatctaga |
212 |
Q |
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| T |
53219553 |
tcttgaacatgactgtatagtgattatttacacaagttccctcaggaaatatgagaagaggattgttgtcagctccctggacatgttccctcaatctaga |
53219652 |
T |
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| Q |
213 |
attcgcataatcatgtaaggaggaatttgaaac |
245 |
Q |
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| T |
53219653 |
atacgcataatcatgtaaggaggaatttgaaac |
53219685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 15411350 - 15411592
Alignment:
| Q |
16 |
atcaatgagtgcaaaataacagaacaacaaaagaaaaactactgcacgaatatgataacat---------tttacatgactgtagttgcaaatgattcac |
106 |
Q |
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| T |
15411350 |
atcaatgggtgcaaaataacagaacaaaaaaagaaaagctattgcactaatatgataacataaactgcattttacatgactgtaattgcaaatgattcaa |
15411449 |
T |
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| Q |
107 |
aaaccttcttgaacatgactgtatagtgattatttacacaagttccctcaggaaatatgagaagaggattgttgtcagctccctggacatgttccctcaa |
206 |
Q |
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| T |
15411450 |
ataccttcttgaacatgactgtatagtgattatttacacaagttccctcaggaaatatgagaagaggattattgtcagctccctggacatgttccctcaa |
15411549 |
T |
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| Q |
207 |
tctagaattcgcataatcat----gtaaggaggaatttgaaac |
245 |
Q |
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| T |
15411550 |
tctagaatatgcataatcatgtaagtaaggaggaatttgaaac |
15411592 |
T |
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