View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8722_high_3 (Length: 242)

Name: NF8722_high_3
Description: NF8722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8722_high_3
NF8722_high_3
[»] chr4 (2 HSPs)
chr4 (85-242)||(35696929-35697086)
chr4 (18-60)||(35697111-35697153)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 85 - 242
Target Start/End: Complemental strand, 35697086 - 35696929
Alignment:
Q  85 catggctgttcctgctccaacctcagctctctatcttcaacccatccacactaaccaccgcaccctccgtcactatcgctcattccctactccttccaat 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35697086 catggctgttcctgctccaacctcagctctctatcttcaacccatccacactaaccaccgcaccctccgtcactatcgctcattccccactccttccaat 35696987  T
Q  185 aaacctttcaccgtcttcgccatggctcccaaaaacaaggtacatacaaaaacatttt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35696986 aaacctttcaccgtcttcgccatggctcccaaaaacaaggtacatacaaaaacatttt 35696929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 35697153 - 35697111
Alignment:
Q  18 aacttgtcctacgtggcagttgagattgtgaatcaagcgcgcg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35697153 aacttgtcctacgtggcagttgagattgtgaatcaagcgcgcg 35697111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University