View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8722_low_2 (Length: 418)

Name: NF8722_low_2
Description: NF8722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8722_low_2
NF8722_low_2
[»] chr1 (39 HSPs)
chr1 (1-407)||(51848495-51848909)
chr1 (31-247)||(8327642-8327853)
chr1 (31-247)||(28839264-28839475)
chr1 (39-247)||(45889219-45889423)
chr1 (51-245)||(36467169-36467358)
chr1 (134-245)||(49494137-49494246)
chr1 (31-247)||(3555527-3555737)
chr1 (139-247)||(5442370-5442476)
chr1 (102-244)||(26755972-26756109)
chr1 (31-186)||(46495943-46496095)
chr1 (31-245)||(51749157-51749366)
chr1 (39-245)||(46536273-46536474)
chr1 (134-245)||(50267412-50267521)
chr1 (141-247)||(32348250-32348354)
chr1 (143-239)||(30749965-30750059)
chr1 (143-239)||(30771416-30771510)
chr1 (31-121)||(32347869-32347959)
chr1 (142-245)||(7785245-7785349)
chr1 (48-245)||(19532893-19533085)
chr1 (139-245)||(52830388-52830492)
chr1 (143-247)||(5040547-5040649)
chr1 (134-222)||(28277035-28277121)
chr1 (150-245)||(6787288-6787381)
chr1 (142-245)||(48242564-48242665)
chr1 (136-174)||(36232832-36232870)
chr1 (142-238)||(17342861-17342955)
chr1 (39-121)||(27698745-27698827)
chr1 (143-183)||(948621-948661)
chr1 (134-174)||(5563039-5563079)
chr1 (141-245)||(13500701-13500805)
chr1 (36-245)||(17724688-17724892)
chr1 (142-245)||(43895880-43895980)
chr1 (31-94)||(11425989-11426052)
chr1 (143-245)||(42926168-42926268)
chr1 (31-93)||(4466275-4466337)
chr1 (154-192)||(7787707-7787745)
chr1 (142-187)||(46880448-46880493)
chr1 (142-245)||(32587798-32587899)
chr1 (142-245)||(34813950-34814051)
[»] chr7 (32 HSPs)
chr7 (31-247)||(2846647-2846858)
chr7 (31-293)||(29257472-29257737)
chr7 (46-245)||(5724681-5724874)
chr7 (31-243)||(33584487-33584695)
chr7 (39-247)||(7425848-7426053)
chr7 (31-247)||(44604449-44604659)
chr7 (134-245)||(30463041-30463150)
chr7 (134-245)||(48981681-48981790)
chr7 (134-245)||(49100476-49100584)
chr7 (45-245)||(11616500-11616696)
chr7 (39-121)||(39693724-39693806)
chr7 (39-238)||(29434561-29434754)
chr7 (39-238)||(31581423-31581617)
chr7 (134-245)||(36117686-36117796)
chr7 (134-245)||(47454029-47454138)
chr7 (134-240)||(18235215-18235319)
chr7 (134-192)||(21387504-21387562)
chr7 (46-245)||(34963781-34963978)
chr7 (142-245)||(37490591-37490692)
chr7 (143-186)||(7456614-7456657)
chr7 (134-238)||(23703941-23704043)
chr7 (148-245)||(23058858-23058952)
chr7 (31-245)||(40038082-40038292)
chr7 (143-192)||(23186167-23186216)
chr7 (134-245)||(40803600-40803708)
chr7 (142-245)||(46095394-46095494)
chr7 (143-245)||(2842025-2842125)
chr7 (139-240)||(38181852-38181951)
chr7 (142-242)||(33774020-33774117)
chr7 (134-179)||(37157195-37157240)
chr7 (45-94)||(48981318-48981367)
chr7 (46-94)||(12308319-12308367)
[»] chr3 (33 HSPs)
chr3 (31-247)||(5245337-5245548)
chr3 (31-247)||(26134674-26134885)
chr3 (139-247)||(54122195-54122301)
chr3 (134-245)||(9017826-9017935)
chr3 (102-245)||(32827277-32827415)
chr3 (145-245)||(33994693-33994791)
chr3 (134-198)||(37041891-37041955)
chr3 (47-237)||(54493850-54494034)
chr3 (134-245)||(54782988-54783097)
chr3 (51-187)||(15280550-15280683)
chr3 (39-162)||(39365071-39365191)
chr3 (139-247)||(43639487-43639593)
chr3 (142-245)||(39866526-39866627)
chr3 (144-245)||(17776967-17777066)
chr3 (144-245)||(19078268-19078367)
chr3 (142-245)||(32023073-32023175)
chr3 (39-245)||(41031505-41031709)
chr3 (141-222)||(46785975-46786056)
chr3 (142-245)||(10855027-10855128)
chr3 (142-245)||(53876409-53876510)
chr3 (139-247)||(21296474-21296580)
chr3 (134-183)||(48744284-48744333)
chr3 (142-245)||(55415412-55415513)
chr3 (31-93)||(21585530-21585592)
chr3 (141-245)||(2868606-2868708)
chr3 (165-245)||(11251100-11251178)
chr3 (142-183)||(54458342-54458383)
chr3 (134-245)||(14756087-14756196)
chr3 (134-245)||(45392115-45392224)
chr3 (142-245)||(52325210-52325311)
chr3 (166-245)||(1772079-1772156)
chr3 (142-241)||(36097632-36097729)
chr3 (139-183)||(44219066-44219110)
[»] chr4 (43 HSPs)
chr4 (31-293)||(41710061-41710326)
chr4 (31-247)||(42024172-42024383)
chr4 (40-247)||(49306521-49306723)
chr4 (31-247)||(42185767-42185978)
chr4 (142-245)||(54729457-54729558)
chr4 (52-245)||(39979726-39979914)
chr4 (46-247)||(18849730-18849926)
chr4 (46-245)||(49812169-49812363)
chr4 (134-245)||(1825219-1825330)
chr4 (39-245)||(33047431-33047626)
chr4 (39-192)||(42544142-42544292)
chr4 (142-241)||(4360385-4360482)
chr4 (138-229)||(9093751-9093840)
chr4 (142-245)||(17237076-17237177)
chr4 (142-245)||(41203770-41203871)
chr4 (46-192)||(29644295-29644438)
chr4 (102-245)||(38976987-38977126)
chr4 (46-192)||(48740460-48740603)
chr4 (39-247)||(26185121-26185318)
chr4 (142-245)||(43334996-43335097)
chr4 (39-245)||(8294964-8295163)
chr4 (39-93)||(29656501-29656555)
chr4 (134-192)||(51527443-51527501)
chr4 (141-241)||(283454-283552)
chr4 (39-224)||(40881186-40881367)
chr4 (31-93)||(38861352-38861414)
chr4 (134-192)||(44020786-44020844)
chr4 (196-245)||(42367874-42367923)
chr4 (142-245)||(27977180-27977281)
chr4 (142-245)||(38160125-38160226)
chr4 (142-245)||(3686044-3686147)
chr4 (139-174)||(25149481-25149516)
chr4 (145-247)||(28974342-28974442)
chr4 (145-222)||(8065569-8065644)
chr4 (142-192)||(22872412-22872462)
chr4 (136-170)||(25902508-25902542)
chr4 (134-176)||(51572268-51572310)
chr4 (139-176)||(1796282-1796319)
chr4 (142-222)||(41436514-41436592)
chr4 (142-174)||(29990514-29990546)
chr4 (142-245)||(39258243-39258346)
chr4 (139-183)||(43421330-43421374)
chr4 (142-245)||(49448874-49448975)
[»] chr8 (28 HSPs)
chr8 (39-247)||(44790393-44790597)
chr8 (31-247)||(28802692-28802903)
chr8 (39-245)||(38252410-38252612)
chr8 (134-245)||(22324928-22325037)
chr8 (39-247)||(5391981-5392185)
chr8 (141-245)||(42412356-42412458)
chr8 (136-245)||(2349377-2349485)
chr8 (39-245)||(5962446-5962648)
chr8 (142-245)||(12653720-12653821)
chr8 (134-245)||(29615823-29615932)
chr8 (102-245)||(32967250-32967388)
chr8 (47-247)||(33190880-33191075)
chr8 (31-247)||(42558554-42558763)
chr8 (146-245)||(12957954-12958051)
chr8 (39-174)||(34287121-34287253)
chr8 (142-247)||(4274270-4274373)
chr8 (143-239)||(31410587-31410681)
chr8 (134-245)||(33746192-33746301)
chr8 (134-240)||(34133152-34133256)
chr8 (134-243)||(45425510-45425617)
chr8 (142-183)||(22490424-22490465)
chr8 (139-247)||(32241395-32241501)
chr8 (142-245)||(139055-139156)
chr8 (142-174)||(325158-325190)
chr8 (1-39)||(67203-67241)
chr8 (139-245)||(29730869-29730975)
chr8 (149-245)||(13084921-13085015)
chr8 (154-245)||(4480443-4480531)
[»] chr5 (28 HSPs)
chr5 (31-247)||(33988124-33988336)
chr5 (39-247)||(35334498-35334701)
chr5 (46-245)||(11099451-11099645)
chr5 (45-247)||(42575610-42575807)
chr5 (31-247)||(17242926-17243136)
chr5 (134-245)||(7613732-7613841)
chr5 (134-245)||(25814389-25814498)
chr5 (143-247)||(35646061-35646163)
chr5 (139-248)||(39008158-39008269)
chr5 (142-245)||(3725219-3725320)
chr5 (142-229)||(8369686-8369771)
chr5 (142-245)||(16283561-16283662)
chr5 (39-247)||(22582844-22583046)
chr5 (143-192)||(6610871-6610920)
chr5 (139-247)||(8692790-8692896)
chr5 (142-183)||(20189925-20189966)
chr5 (142-245)||(24231043-24231142)
chr5 (142-183)||(39183661-39183702)
chr5 (143-183)||(13135787-13135827)
chr5 (142-245)||(36446661-36446762)
chr5 (142-245)||(42211366-42211463)
chr5 (142-193)||(25344762-25344813)
chr5 (143-245)||(36469068-36469168)
chr5 (134-192)||(6735382-6735440)
chr5 (35-92)||(3725116-3725173)
chr5 (40-93)||(8369818-8369871)
chr5 (196-245)||(41184745-41184794)
chr5 (211-243)||(31196419-31196451)
[»] chr6 (11 HSPs)
chr6 (139-247)||(31265809-31265915)
chr6 (39-245)||(15081356-15081557)
chr6 (46-245)||(30063922-30064116)
chr6 (134-245)||(7301055-7301162)
chr6 (142-245)||(33109406-33109507)
chr6 (139-247)||(3604571-3604677)
chr6 (142-245)||(4238454-4238553)
chr6 (134-183)||(9755180-9755229)
chr6 (142-183)||(117112-117153)
chr6 (143-192)||(34915837-34915886)
chr6 (142-245)||(7739491-7739592)
[»] chr2 (28 HSPs)
chr2 (142-243)||(435053-435152)
chr2 (50-240)||(28108353-28108539)
chr2 (134-245)||(24775781-24775890)
chr2 (134-245)||(30757541-30757650)
chr2 (51-245)||(28925821-28926010)
chr2 (31-126)||(33751386-33751481)
chr2 (134-247)||(43077697-43077808)
chr2 (142-247)||(28301467-28301570)
chr2 (142-245)||(2882018-2882119)
chr2 (142-245)||(23684992-23685093)
chr2 (51-245)||(41436024-41436212)
chr2 (39-248)||(3100333-3100537)
chr2 (142-248)||(5211928-5212032)
chr2 (31-247)||(37247855-37248067)
chr2 (142-245)||(13375161-13375264)
chr2 (143-245)||(11726695-11726795)
chr2 (139-245)||(28526994-28527098)
chr2 (134-183)||(7650008-7650057)
chr2 (139-247)||(44534454-44534560)
chr2 (141-242)||(18181189-18181288)
chr2 (139-247)||(28572238-28572343)
chr2 (143-183)||(36103334-36103374)
chr2 (142-245)||(43950421-43950522)
chr2 (40-94)||(28572145-28572199)
chr2 (139-192)||(1908518-1908571)
chr2 (142-183)||(39095664-39095705)
chr2 (196-245)||(40965099-40965148)
chr2 (150-245)||(33602199-33602292)
[»] scaffold0006 (1 HSPs)
scaffold0006 (139-247)||(229853-229958)
[»] scaffold0045 (1 HSPs)
scaffold0045 (134-193)||(26347-26406)
[»] scaffold0034 (1 HSPs)
scaffold0034 (142-245)||(98858-98959)
[»] scaffold0058 (1 HSPs)
scaffold0058 (134-245)||(14481-14590)
[»] scaffold0001 (1 HSPs)
scaffold0001 (37-184)||(394710-394853)
[»] scaffold0321 (1 HSPs)
scaffold0321 (151-241)||(9529-9617)
[»] scaffold0028 (2 HSPs)
scaffold0028 (142-184)||(26646-26688)
scaffold0028 (31-87)||(26534-26589)
[»] scaffold0221 (1 HSPs)
scaffold0221 (142-192)||(8920-8970)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 51848909 - 51848495
Alignment:
Q  1 tagaaaatggttgtacaaatatcagttatcttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||          
T  51848909 tagaaaatggttgtacaaatatcagttatcttttcaataaaaatgtgtcccaaaataagtgagacatttcacttttcaatacatcattaattactttttt 51848810  T
Q  101 ncctttataactctaattaatgctacnnnnnnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaac 200  Q
     |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51848809 tcctttataactctaattaatgctactttttt-atcatttccaattcaatatattccactttatatttatgatagtggagaatacaccaatatatttaac 51848711  T
Q  201 aacagcagttaaaactatttttctatctcattcatttatacatttgt---------tgtgatttgagcaaaatagctcggttaatccgggacaaatggag 291  Q
    || |||| |||||||||||||||||||||  |||||||||||||| |         | |||||||||||||||||||||||||||||||||| |||||||    
T  51848710 aatagcacttaaaactatttttctatctccatcatttatacatttatcttaatatgtatgatttgagcaaaatagctcggttaatccgggacgaatggag 51848611  T
Q  292 taaaacacaatcataagggagactcccataagattcaatgcggaaaatatcttgaaaatacgatgtatcggatttgaggtcaagatattggtaaaaacta 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51848610 taaaacacaatcataagggagactcccataagattcaatgcggaaaatatcttgaaaatacgatgtatcggatttgaggtcaaaatattggtaaaaacta 51848511  T
Q  392 tgccacacagaataat 407  Q
    ||||||||||||||||    
T  51848510 tgccacacagaataat 51848495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 247
Target Start/End: Original strand, 8327642 - 8327853
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||       |||||||||||||||||||| ||||        
T  8327642 ttttcaataaaaaagtgtcccaaaataaatgagccatttcacttttcaatacatcattaattacttttttccctttataactctaattaatactac---t 8327738  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| |  ||||||||||||||||| |||  ||||||||||| |||||||| || |  ||| ||||||| |||| |||||| ||||||||| |||||    
T  8327739 ttcatcactctcaattcaatatattccattttgcatttatgataggggagaatagacca--atacttaacaagagcacttaaaattatttttctctctca 8327836  T
Q  231 ttcatttatacatttgt 247  Q
    |||||||||||||||||    
T  8327837 ttcatttatacatttgt 8327853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 247
Target Start/End: Original strand, 28839264 - 28839475
Alignment:
Q  31 ttttcaataaaaat-gtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnn 129  Q
    |||||||||||||  |||| |||||||||||||| ||||||| ||||||||||||  ||||||||       ||||||||||| |||||||| ||||       
T  28839264 ttttcaataaaaaaagtgttccaaaataagtgagtcatttcacttttcaatacatatttaattactttttc-cctttataactataattaatactacttt 28839362  T
Q  130 nnnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctc 229  Q
        |||| | ||||||||||||||||||||||  |||||||||||||||||||| || |  ||| ||||||| |||| |||||||||||||||| ||||    
T  28839363 c---atcactcccaattcaatatattccactttgcatttatgatagtggagaatagacca--atacttaacaagagcatttaaaactatttttctctctc 28839457  T
Q  230 attcatttatacatttgt 247  Q
     |||||||||||||||||    
T  28839458 cttcatttatacatttgt 28839475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 45889423 - 45889219
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||||       | |||||||||||||||||| ||||       |||||    
T  45889423 aaaaaagtgtcccaaaataagtgagtcatttcacttttcaatacgtcattaattacttttttccttttataactctaattaatactactttc---atcat 45889327  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatct-cattcattt 237  Q
    |   ||||||||||||||||||||  |||||||||| ||||||||| || |  ||| ||||||| |||| ||||||| |||||||| ||| | |||||||    
T  45889326 tcataattcaatatattccactttgcatttatgataatggagaatagacca--atagttaacaagagcacttaaaaccatttttctctctcctttcattt 45889229  T
Q  238 atacatttgt 247  Q
    ||||||||||    
T  45889228 atacatttgt 45889219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 245
Target Start/End: Complemental strand, 36467358 - 36467169
Alignment:
Q  51 caaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaattcaat 150  Q
    |||||| | |||| ||||||| |||||||||||  |||||||||       |||||||||||| ||||||| |||        |||||||||||||||||    
T  36467358 caaaatgactgagtcatttcacttttcaatacaatattaattactttttcccctttataactcaaattaatacta---ttttcatcatttccaattcaat 36467262  T
Q  151 atattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    ||||| ||||||| |||||| |||||||||||| ||| |  ||| |||||||  ||| |||||||||||||||| ||||||||||||||||||||    
T  36467261 atatttcactttacatttatcatagtggagaatccacca--atacttaacaagtgcacttaaaactatttttctctctcattcatttatacattt 36467169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 49494246 - 49494137
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||  || |  |||||||||||  ||| |||||||||||||||| |||| |||    
T  49494246 atcatttctaattcaatatattccactttacatttatgatagtggagaattgacca--atatttaacaagtgcacttaaaactatttttctctctctttc 49494149  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  49494148 atttatacattt 49494137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 3555737 - 3555527
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    |||| |||||||| |||||||||||||||||||  |||||| |||||| |||||||||||||||       | |||||||||||||||||| ||||        
T  3555737 tttttaataaaaa-gtgtcccaaaataagtgagttatttcatttttcattacatcattaattacttttttccttttataactctaattaatactactttc 3555639  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||  | ||||||||||||||||||||||  |||||||||||||||||||| || |  ||| |||| || |||| ||||||| |||||||  | ||     
T  3555638 ---atctatcccaattcaatatattccactttgcatttatgatagtggagaatagacca--atacttaaaaaaagcacttaaaaccatttttccctatcc 3555544  T
Q  231 ttcatttatacatttgt 247  Q
    |||||||||||||||||    
T  3555543 ttcatttatacatttgt 3555527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 5442370 - 5442476
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||  ||| ||||||| |  | ||||||| |||||||| |||||||||||||    
T  5442370 ttccaattcaatatattccactttgcatttatgatagtggagaatgcacta--atacttaacaagataacttaaaaccatttttctctctcattcattta 5442467  T
Q  239 tacatttgt 247  Q
    |||||||||    
T  5442468 tacatttgt 5442476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 26755972 - 26756109
Alignment:
Q  102 cctttataactctaattaatgctacnnnnnnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaaca 201  Q
    |||||||||||||||||||| ||||       ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||  |  ||| ||||||    
T  26755972 cctttataactctaattaatactactttc---atcattttcaattcaatatattacactttatatttatgatagtggagaatgcatca--atacttaaca 26756066  T
Q  202 acagcagttaaaactatttttctatctcattcatttatacatt 244  Q
    |  ||| ||||||||||||| || |||||||||||||||||||    
T  26756067 agtgcacttaaaactattttcctctctcattcatttatacatt 26756109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 46495943 - 46496095
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||||||        |||||||||||||||||||| ||||        
T  46495943 ttttcaataaaaaagtgtctcaaaataagtgagtcatttcatttttcaatacatcattaattattttttttcctttataactctaattaatactac---t 46496039  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaataca 186  Q
       ||||   | ||||||||||||||||||||  |||||||||| |||||||||||    
T  46496040 ttcatcacgcctaattcaatatattccactttgcatttatgataatggagaataca 46496095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 51749366 - 51749157
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    |||||||||||||  ||||| |||||||||||| ||||||| ||||||||| |||||||||||        ||||||||||||||||||||  |||        
T  51749366 ttttcaataaaaaaatgtcctaaaataagtgagtcatttcatttttcaatatatcattaattatttttttccctttataactctaattaatattac---t 51749270  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| | ||||||||||||||||||||||  |||||||||| ||||||||| || |  ||| ||||||| | || ||||||  | |||||| ||||     
T  51749269 ttcatcactcccaattcaatatattccactttgcatttatgataatggagaataaacca--atacttaacaagaacacttaaaatcagttttctctctcc 51749172  T
Q  231 ttcatttatacattt 245  Q
    |||||||||||||||    
T  51749171 ttcatttatacattt 51749157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 46536273 - 46536474
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| ||||| |||||||| |||| ||||||| |||||||||||  |||||||||       ||| |||||||||||||||| ||||       ||||     
T  46536273 aaaaaagtgtctcaaaataactgagtcatttcacttttcaatacaatattaattacatttttccctctataactctaattaatactactttc---atcac 46536369  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |   |||| ||||||||||||||| |||||||||||||||||||||||  |  ||||||||||| |||| ||||||| |||||||| | || ||||| ||    
T  46536370 tcttaatttaatatattccactttgtatttatgatagtggagaataca--acaatatttaacaagagcacttaaaaccatttttctctttccttcatcta 46536467  T
Q  239 tacattt 245  Q
    || ||||    
T  46536468 taaattt 46536474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 50267521 - 50267412
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||| ||||||||||||||| ||||||| |||||||||| |||||||| ||| |  ||| |||||||  ||| |||||||||||||||| || | |||    
T  50267521 atcattcccaattcaatatatttcactttacatttatgataatggagaatgcacca--atacttaacaagtgcacttaaaactatttttctctcactttc 50267424  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  50267423 atttatacattt 50267412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 32348250 - 32348354
Alignment:
Q  141 ccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttata 240  Q
    ||||||||||||||||||||||  |||| |||||||||| |||| || ||||   ||||||| |||| ||||||| |||||||| |||| ||||||||||    
T  32348250 ccaattcaatatattccactttgcatttgtgatagtggaaaatagaccaatac--ttaacaagagcacttaaaaccatttttctctctccttcatttata 32348347  T
Q  241 catttgt 247  Q
    |||||||    
T  32348348 catttgt 32348354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 30749965 - 30750059
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttat 239  Q
    |||||||||||| |||||||  |||||||||||| |||||||||  |||||  ||||||| |||| |||||||||||||||| ||||||| ||||||    
T  30749965 aattcaatatataccactttgcatttatgatagtagagaatacatcaatat--ttaacaaaagcacttaaaactatttttctctctcatttatttat 30750059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 30771416 - 30771510
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttat 239  Q
    |||||||||||| |||||||  |||||||||||| |||||||||  |||||  ||||||| |||| |||||||||||||||| ||||||| ||||||    
T  30771416 aattcaatatataccactttgcatttatgatagtagagaatacatcaatat--ttaacaaaagcacttaaaactatttttctctctcatttatttat 30771510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 32347869 - 32347959
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaat 121  Q
    |||||||||||||  |||||||| |||||||||  |||||| ||||||||||||||||||||||       ||||||||||||||||||||    
T  32347869 ttttcaataaaaaattgtcccaatataagtgagctatttcacttttcaatacatcattaattacttttttccctttataactctaattaat 32347959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 7785349 - 7785245
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca-ttcatttata 240  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||  ||||  | |||||| | || |||||||||||||||| ||| | ||||||||||    
T  7785349 caattcaatatatttcactttacatttatgatagtggagaatgcatcaatacttataacaataacacttaaaactatttttctctcttatttcatttata 7785250  T
Q  241 cattt 245  Q
    |||||    
T  7785249 cattt 7785245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 19533085 - 19532893
Alignment:
Q  48 tcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaattc 147  Q
    ||||||||||| |||| ||||| | |||||||||||  |||||||||       ||||||||||| |||||||| ||||       ||||||| || |||    
T  19533085 tcccaaaataactgagtcattttacttttcaatacaatattaattacttttttccctttataactttaattaatactactttc---atcatttacagttc 19532989  T
Q  148 aatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||| ||||||| |||||||||||||||||||  || |  ||| |||||||   || |||||||||||||||| | || |||||||||| ||||    
T  19532988 aatatatttcactttacatttatgatagtggagaatgaacca--atacttaacaagtacacttaaaactatttttctctatccttcatttatatattt 19532893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 52830492 - 52830388
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||| |||||||||||||||| ||||||||||||||| ||| ||| |  ||| |||||||  ||| | |||| ||||||||| |||| ||||||||    
T  52830492 ttccaattgaatatattccactttacatttatgatagtggaaaatgcacca--atacttaacaaatgcactcaaaattatttttctctctccttcattta 52830395  T
Q  239 tacattt 245  Q
    |||||||    
T  52830394 tacattt 52830388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 5040649 - 5040547
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttataca 242  Q
    ||||||||||||| |||||   ||||||||||||||||||| ||  ||||   ||||||| | ||  |||||| |||||||| |||||||||||||||||    
T  5040649 aattcaatatatttcacttcgcatttatgatagtggagaatgcatcaatac--ttaacaagatcacctaaaaccatttttctctctcattcatttataca 5040552  T
Q  243 tttgt 247  Q
    |||||    
T  5040551 tttgt 5040547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 28277121 - 28277035
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactattttt 222  Q
    ||||||| |||||||||||||| ||||||| |||||||||| |||||||| ||| |  ||| |||||||  ||| ||||||||||||||    
T  28277121 atcattttcaattcaatatatttcactttacatttatgatactggagaatgcacca--atacttaacaagtgcacttaaaactattttt 28277035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 6787288 - 6787381
Alignment:
Q  150 tatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||||||||| ||||||||||||||| |||  ||||  |||||||||||   || |||||||||||||||| |||| ||| |||||| ||||    
T  6787288 tatattccactttacatttatgatagtggataatgtacta--atatttaacaaatacatttaaaactatttttctctctctttcgtttatatattt 6787381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 48242665 - 48242564
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||| |||||||||||||||| || ||  |  ||| ||| |||  ||| |||||||||||||| |  ||| |||||||||||    
T  48242665 caattcaatatattccactttacatttatgatagtggaggatgcatca--atacttatcaagtgcacttaaaactatttttatccctccttcatttatac 48242568  T
Q  242 attt 245  Q
    ||||    
T  48242567 attt 48242564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 36232870 - 36232832
Alignment:
Q  136 catttccaattcaatatattccactttatatttatgata 174  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  36232870 catttccaattcaatatattctactttatatttatgata 36232832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 17342861 - 17342955
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||||||||| |||||| ||||||||||| |||||||| ||| |  ||| ||||||| | || ||||||| |||||||  |||| ||||||||    
T  17342861 caattcaatatatttcactttgtatttatgataatggagaatgcacca--atacttaacaaaaacacttaaaaccatttttccctctccttcattta 17342955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 27698745 - 27698827
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaat 121  Q
    ||||| |||||| ||||||| |||| ||||||| |||||||||||  |||||||||       ||||||||||||||||||||    
T  27698745 aaaaaagtgtcctaaaataattgagtcatttcacttttcaatacaatattaattacttttttccctttataactctaattaat 27698827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 948661 - 948621
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaat 183  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  948661 aattcaatatattccactttgcatttatgatagtggagaat 948621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 5563039 - 5563079
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgata 174  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  5563039 atcatttccaattcaatatgttccactttacatttatgata 5563079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 13500805 - 13500701
Alignment:
Q  141 ccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttc--tatctcattcattta 238  Q
    |||||||||||| |||||||||  ||||||||||||| ||||| ||| |||| |  |||||| |||| ||||||  |||| ||  | |||||||||||||    
T  13500805 ccaattcaatattttccactttgcatttatgatagtgaagaatgcaccaataca--taacaaaagcacttaaaatcatttctctttctctcattcattta 13500708  T
Q  239 tacattt 245  Q
    |||||||    
T  13500707 tacattt 13500701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 245
Target Start/End: Complemental strand, 17724892 - 17724688
Alignment:
Q  36 aataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnat 135  Q
    |||||||| ||||| |||||||| |||| ||||||| |||||||||||  ||||||||          |||||||||||||||||| |||        ||    
T  17724892 aataaaaaagtgtctcaaaataattgagtcatttcatttttcaatacaatattaattattttaatctttttataactctaattaatacta---ttttcat 17724796  T
Q  136 catttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcat 235  Q
    || | ||||||||||| |||| |||||  ||||||| ||||||||||| ||  |  ||| ||||||| |||| ||||||| |||||||| |||| |||||    
T  17724795 cactcccaattcaataaattctactttgcatttatggtagtggagaatgcatca--ataattaacaagagcacttaaaacaatttttctctctccttcat 17724698  T
Q  236 ttatacattt 245  Q
    |  |||||||    
T  17724697 tattacattt 17724688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 43895880 - 43895980
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||||||||| |||||  |||||||||||||||||| |||| |  ||| ||||||| | ||  |||||||| |||||| |||| ||||| |||||    
T  43895880 caattcaatatattcaactttgcatttatgatagtggagaacacacca--atacttaacaaaaacacataaaacta-ttttctctctctttcatctatac 43895976  T
Q  242 attt 245  Q
    ||||    
T  43895977 attt 43895980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 11426052 - 11425989
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattac 94  Q
    ||||||||||||| |||||| ||||||| |||| ||||||| ||| |||||||  |||||||||    
T  11426052 ttttcaataaaaaagtgtcctaaaataactgagtcatttcactttccaatacaatattaattac 11425989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 42926168 - 42926268
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttataca 242  Q
    ||||||||||||| || |||  ||||||||||||||||||| |||    ||| ||||||| | || ||||||  |||||||| | |||||||||||||||    
T  42926168 aattcaatatatttcattttgcatttatgatagtggagaatgcac--cgatacttaacaaaaacacttaaaatcatttttctctttcattcatttataca 42926265  T
Q  243 ttt 245  Q
    |||    
T  42926266 ttt 42926268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 4466337 - 4466275
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaatta 93  Q
    ||||||||||||| ||||| |||||||| |||| ||||||| ||| |||||||  ||||||||    
T  4466337 ttttcaataaaaaagtgtctcaaaataattgagtcatttcactttccaatacaatattaatta 4466275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 7787707 - 7787745
Alignment:
Q  154 ttccactttatatttatgatagtggagaatacactaata 192  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  7787707 ttccactttacatttatgatagtggagaatacaccaata 7787745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 46880448 - 46880493
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacac 187  Q
    ||||| ||||||||| |||||| |||||||||||||||||| ||||    
T  46880448 caatttaatatattcaactttacatttatgatagtggagaagacac 46880493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 32587798 - 32587899
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||| ||||||  |||||||||| |||| ||| ||  |  ||| ||||||| | || |||||| ||||||||| || | |||||||||||    
T  32587798 caattcaatatatttcactttgcatttatgataatggaaaatgcatca--atacttaacaaaaacacttaaaattatttttctctcaccttcatttatac 32587895  T
Q  242 attt 245  Q
    ||||    
T  32587896 attt 32587899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 34813950 - 34814051
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||||||||| |||||  |||||||||| ||   ||| ||||||||   ||||||| | || |||||||||||||||| |||| |||| | ||||    
T  34813950 caattcaatatattctactttgcatttatgataatgataaatgcactaatac--ttaacaagaacacttaaaactatttttctctctccttcactaatac 34814047  T
Q  242 attt 245  Q
    ||||    
T  34814048 attt 34814051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 2846858 - 2846647
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||       | |||||||||||||||||| ||||        
T  2846858 ttttcaataaaaaagtgtcccaaaataagtgagtcatttcacttttcaatacatcattaattacttttttccttttataactctaattaatactactttc 2846759  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| ||||||||||||||||||||||||  |||||||||||||||||||| || |  ||| ||||||| |||| |||||||||||||||| ||||     
T  2846758 ---atcaattccaattcaatatattccactttgaatttatgatagtggagaatagacca--atacttaacaagagcacttaaaactatttttctctctcg 2846664  T
Q  231 ttcatttatacatttgt 247  Q
    |||||||||||||||||    
T  2846663 ttcatttatacatttgt 2846647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 293
Target Start/End: Original strand, 29257472 - 29257737
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||||||| |||||||||||||||||||  |||||| ||||||||||||||||||||||       ||||||||||||||||||||  |||        
T  29257472 ttttcaataaaaaagtgtcccaaaataagtgagctatttcacttttcaatacatcattaattacttttttccctttataactctaattaatattac---t 29257568  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| | ||||||||||||||||||||||  ||||||||||||||| |||| || |  ||| ||||||| |||| ||||||| |||||| | |||      
T  29257569 ttcatcactcccaattcaatatattccactttgcatttatgatagtggaaaatagacca--ataattaacaagagcacttaaaaccatttttttctctgc 29257666  T
Q  231 ttcatttatacatttgt---------tgtgatttgagcaaaatagctcggttaatccgggacaaatggagta 293  Q
    |||||||||||||||||         |||||||||||| |||| |||||||||||||||||| || ||||||    
T  29257667 ttcatttatacatttgtcttaatatgtgtgatttgagc-aaatggctcggttaatccgggacgaagggagta 29257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 5724874 - 5724681
Alignment:
Q  46 tgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaat 145  Q
    |||||||||||||||||| ||||||| |||||||||||  |||||| ||       | |||||||||||||||||| ||||        ||||||| |||    
T  5724874 tgtcccaaaataagtgagccatttcacttttcaatacaatattaatcactttttttcttttataactctaattaatactactttct---tcatttctaat 5724778  T
Q  146 tcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||  ||| |||||||  ||| |||||||||||||||| |||| |||||||||||||||    
T  5724777 tcaatatatttcactttacatttatgatagtggagaatgcacta--atacttaacaa-ggcacttaaaactatttttctctctccttcatttatacattt 5724681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 33584487 - 33584695
Alignment:
Q  31 ttttcaataaaaat-gtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnn 129  Q
    |||||||||||||  ||||| |||||||| |||| ||||||| |||| |||||||||||||||||       ||||||||||| |||||||| ||||       
T  33584487 ttttcaataaaaaaagtgtctcaaaataactgagccatttcacttttgaatacatcattaattacttttttccctttataactataattaatactacttt 33584586  T
Q  130 nnnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctc 229  Q
        |||| | |||||||||||||||||| |||  |||||||||| |||||||||||| |  ||| ||||||| |||| ||||||| |||||||| ||||    
T  33584587 c---atcactcccaattcaatatattccattttgcatttatgatactggagaatacacca--atacttaacaatagcacttaaaaccatttttctctctc 33584681  T
Q  230 attcatttatacat 243  Q
     |||||||||||||    
T  33584682 cttcatttatacat 33584695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 7426053 - 7425848
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctt-tataactctaattaatgctacnnnnnnnatca 137  Q
    ||||| |||||||||||||| |||| ||||||| |||||||||||  |||||||||       |||| |||||||||| ||||| ||||       |  |    
T  7426053 aaaaaagtgtcccaaaataactgagccatttcacttttcaatacaatattaattacttttttcccttatataactctagttaatactactttc---acaa 7425957  T
Q  138 tttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattt 237  Q
     ||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||  || ||||| | || ||||||| |||||||| ||||||||||||    
T  7425956 cttccaattcaatatattccactttgcatttatgatagtggagaatgcaccaata-cttaaacaagaacacttaaaaccatttttctctctcattcattt 7425858  T
Q  238 atacatttgt 247  Q
    ||||||||||    
T  7425857 atacatttgt 7425848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 44604659 - 44604449
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||||||||        | |||||||||||||||||| ||||        
T  44604659 ttttcaatataaaagtgtcccaaaataagtgagccatttcacttttcaatacatcattaattatgtttttccttttataactctaattaatactac---t 44604563  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| |  ||| |||||||||||||||||   ||||||||||||||||||| || |  ||| ||||||| | || ||||||  |||||||| ||||     
T  44604562 ttcatcactctcaactcaatatattccacttt-gctttatgatagtggagaataaacca--atacttaacaagaacacttaaaatcatttttctctctcc 44604466  T
Q  231 ttcatttatacatttgt 247  Q
    |||||||||||||||||    
T  44604465 ttcatttatacatttgt 44604449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 30463041 - 30463150
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    ||||||| ||||||||||||||||| |||| ||||||||| ||||||||| ||| |  ||| |||||||  ||| |||||||||||||||| ||||||||    
T  30463041 atcattttcaattcaatatattccattttacatttatgattgtggagaatgcacca--atacttaacaagtgcacttaaaactatttttctctctcattc 30463138  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  30463139 atttatacattt 30463150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 48981681 - 48981790
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||| |||| || |||| |  ||||||  ||| |||||||||||||||| |||  |||    
T  48981681 atcatttccaatttaatatattccactttacatttatgatagtggataatataccaataca--taacaagtgcatttaaaactatttttctttcttcttc 48981778  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  48981779 atttatacattt 48981790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 49100584 - 49100476
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| || |  ||| |||||||  ||| || ||||||||||||| | || |||    
T  49100584 atcatttccaattcaatatattccactttacatttatgatagtggagaataaacca--atacttaacaagtgcactt-aaactatttttctctgtctttc 49100488  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  49100487 atttatacattt 49100476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 245
Target Start/End: Original strand, 11616500 - 11616696
Alignment:
Q  45 gtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaa 144  Q
    |||||||||||||| |||| ||||||| |||||||||||  |||||||||       |||||||||||||||||||| | ||       | || | ||||    
T  11616500 gtgtcccaaaataactgagccatttcacttttcaatacaatattaattacttttttccctttataactctaattaatacaactttc---accactcccaa 11616596  T
Q  145 ttcaat-atattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacat 243  Q
    |||||| ||||||||||||  || |||||||||||||||| ||| ||||   ||||||| |||| ||||||| |||||||| |||| |||||||||||||    
T  11616597 ttcaattatattccactttgcatatatgatagtggagaatgcaccaatac--ttaacaagagcacttaaaaccatttttctctctccttcatttatacat 11616694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 39693724 - 39693806
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaat 121  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||       ||||||||||||||||||||    
T  39693724 aaaaaagtgtcccaaaataagtgagtcatttcacttttcaatacatcattaattacttttttccctttataactctaattaat 39693806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 238
Target Start/End: Complemental strand, 29434754 - 29434561
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| ||||| |||||||| |||| ||||||  ||| |||||||  ||||||||        |||||||||||||||||||| ||||       |||||    
T  29434754 aaaaaagtgtctcaaaataactgagtcatttcgctttccaatacaatattaattattttttcccctttataactctaattaatactactttc---atcat 29434658  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |  |||||||||||||||||||||  |||||||| |||||||||| ||| |  ||| ||||||| |||| |||||||||||||||| |||| ||||||||    
T  29434657 tcacaattcaatatattccactttgcatttatgaaagtggagaatccacca--atacttaacaaaagcacttaaaactatttttctctctc-ttcattta 29434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 238
Target Start/End: Complemental strand, 31581617 - 31581423
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| || ||| ||||||| |||| ||||||| |||||||||||  |||||||||       | |||||||||||||||||| ||||       |||||    
T  31581617 aaaaaagtatcctaaaataactgagtcatttcacttttcaatacaatattaattacttttttccatttataactctaattaatactactttc---atcat 31581521  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    || ||||||||||||||||| |||| |||||||||| |||||||| ||| |  ||| |||||||  | | |||||||||||||| | |||| ||||||||    
T  31581520 tttcaattcaatatattccattttacatttatgatattggagaatgcacca--atacttaacaaatgtacttaaaactatttttatctctccttcattta 31581423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 36117686 - 36117796
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatg-atagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcatt 232  Q
    ||||||| |||||||||||||||||||||| ||||||| |||||||||||| |||  | ||| |||||||  ||| |||||||||||||||| | || ||    
T  36117686 atcattttcaattcaatatattccactttacatttatgaatagtggagaatgcac--aaatacttaacaagtgcacttaaaactatttttctctttcctt 36117783  T
Q  233 catttatacattt 245  Q
     ||||||||||||    
T  36117784 tatttatacattt 36117796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 47454029 - 47454138
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    ||||||| ||| |||||||||| ||||||| ||||||||||||||||||| ||| |  ||| |||||||  ||| ||||||||||||| || |||| |||    
T  47454029 atcatttacaaatcaatatatttcactttacatttatgatagtggagaatgcacca--atacttaacaagtgcacttaaaactattttactctctccttc 47454126  T
Q  234 atttatacattt 245  Q
    ||||||| ||||    
T  47454127 atttatatattt 47454138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 18235215 - 18235319
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||| ||| |  ||| |||||||  ||| |||||| ||||||| | |||| |||    
T  18235215 atcatttccaatttcatatattccactttacatttatgatagtggagaatgcacca--atacttaacaagtgcatttaaaattatttttttctctccttc 18235312  T
Q  234 atttata 240  Q
    |||||||    
T  18235313 atttata 18235319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 21387562 - 21387504
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  21387562 atcattttcaattcaatatattccactttacatttatgatagtggagaatgcaccaata 21387504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 34963978 - 34963781
Alignment:
Q  46 tgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaat 145  Q
    ||||||||||||| |||| ||||||| |||||||||||  |||||||||       ||||||||||||||||||||  |||       ||||||  ||||    
T  34963978 tgtcccaaaataactgagtcatttcacttttcaatacagtattaattacttttttccctttataactctaattaatattac---tttcatcattctcaat 34963882  T
Q  146 tcaatatattccactttatatttatgatagtg---gagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttataca 242  Q
    | |||||||| ||||||| |||||||||||||   |||||| ||| |  |||||||||||   || ||||||||||||||||  |||  |||||||||||    
T  34963881 taaatatatttcactttacatttatgatagtgaaagagaatgcacca--atatttaacaagttcacttaaaactatttttctccctctatcatttataca 34963784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 37490692 - 37490591
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||| |  ||| |||| || | || ||||||  |||||||| |||| |||||||||||    
T  37490692 caattcaatatattccactttgcatttatgatagtggagaatgcacca--atacttaaaaaaaacacttaaaatcatttttctctctccttcatttatac 37490595  T
Q  242 attt 245  Q
    ||||    
T  37490594 attt 37490591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 7456657 - 7456614
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaataca 186  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  7456657 aatttaatatattccactttatatttatgatagtggagaataca 7456614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 23703941 - 23704043
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    ||||||| |||||||||||||| || |||| ||||||||||||||||||| ||  |  ||| |||||||  ||  |||||||||||||||| |||| |||    
T  23703941 atcattttcaattcaatatatttcattttacatttatgatagtggagaatgcagca--ataattaacaagtgcgcttaaaactatttttctctctccttc 23704038  T
Q  234 attta 238  Q
    |||||    
T  23704039 attta 23704043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 23058858 - 23058952
Alignment:
Q  148 aatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||| ||||||  ||||||||||||||||||| ||| ||||    |||||| | || |||||||||||||||| |||| |||||||||| ||||    
T  23058858 aatatatttcactttgcatttatgatagtggagaatgcaccaata---ctaacaagaacacttaaaactatttttctctctctttcatttatatattt 23058952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 40038292 - 40038082
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    |||||| ||||||  ||| || ||||||||||| ||||||| ||||||||| |||||||||||        |||||||||||||||||||| ||||        
T  40038292 ttttcattaaaaaaatgttccgaaataagtgagtcatttcacttttcaatatatcattaatta-tttttttcctttataactctaattaatactac---t 40038197  T
Q  131 nnnatcatttccaattcaa---tatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatc 227  Q
       |||| ||| |||| ||   ||||||  ||||| |||||||||||||| |||||||||    ||| ||||||| | || |||||| ||||||||| |     
T  40038196 ttcatcacttcaaatttaatagtatattttactttgtatttatgatagtgaagaatacac---aatacttaacaagatcatttaaaattatttttctctt 40038100  T
Q  228 tcattcatttatacattt 245  Q
    || |||||||||||||||    
T  40038099 tccttcatttatacattt 40038082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 23186216 - 23186167
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  23186216 aattcaatatattctactttgtatttatgatagtggagaatgcaccaata 23186167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 40803708 - 40803600
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||| ||||||||||||| | || |||| |||||||||||||||||| |||| |  |||||||||||   ||  ||||| ||||||||| |||| |||    
T  40803708 atcattcccaattcaatataattcattttacatttatgatagtggagaaaacacca--atatttaacaagtaca-ctaaaattatttttctctctccttc 40803612  T
Q  234 atttatacattt 245  Q
    ||||||| ||||    
T  40803611 atttataaattt 40803600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 46095494 - 46095394
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||| ||||||  |||||||||||| |||||| |||  | ||||||||||| |||| | ||||| |||||| | |||| || ||||||||    
T  46095494 caattcaatatatttcactttgcatttatgatagtagagaatgcac--aaatatttaacaagagcactcaaaaccattttt-tttctcctttatttatac 46095398  T
Q  242 attt 245  Q
    ||||    
T  46095397 attt 46095394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 2842125 - 2842025
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttataca 242  Q
    ||||||||||||| ||||||  ||||||||||||||||||| ||  |  ||| || |||| | || |||| || |||||||| |||| ||||||||||||    
T  2842125 aattcaatatatttcactttgcatttatgatagtggagaatgcatca--atacttgacaataacacttaacaccatttttctctctccttcatttataca 2842028  T
Q  243 ttt 245  Q
    |||    
T  2842027 ttt 2842025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 38181951 - 38181852
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||||||||||||| | |||  ||||||||||||||| ||| ||| |  ||| ||| ||| | || ||||||| |||||||| |||| ||||||||    
T  38181951 ttccaattcaatatattctattttgcatttatgatagtggaaaatgcacca--atacttaccaagaacacttaaaaccatttttctctctctttcattta 38181854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 33774117 - 33774020
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||| |||||||||||||  || |||||||||||||||||||  |  ||| ||||||| | || | |||||||||||||| |||| |||| ||||||    
T  33774117 caattcagtatattccactttgcatctatgatagtggagaatacatca--atacttaacaaga-cactcaaaactatttttctctctctttcacttatac 33774021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 37157195 - 37157240
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtgga 179  Q
    ||||||| ||||| ||||||||| |||||| |||||||||||||||    
T  37157195 atcattttcaatttaatatattctactttacatttatgatagtgga 37157240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 48981318 - 48981367
Alignment:
Q  45 gtgtcccaaaataagtgagacatttcaattttcaatacatcattaattac 94  Q
    |||||||||||||| |||| ||||||| |||||||||||  |||||||||    
T  48981318 gtgtcccaaaataactgagtcatttcacttttcaatacaatattaattac 48981367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 12308319 - 12308367
Alignment:
Q  46 tgtcccaaaataagtgagacatttcaattttcaatacatcattaattac 94  Q
    |||| |||||||| |||| |||||||||||||||||||  |||||||||    
T  12308319 tgtctcaaaataactgagtcatttcaattttcaatacaatattaattac 12308367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 247
Target Start/End: Original strand, 5245337 - 5245548
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||||||| |||| |||||||||||||| ||||||| |||||||||||| |||||||||       |||||||||||||||||||| | ||        
T  5245337 ttttcaataaaaaagtgttccaaaataagtgagccatttcacttttcaatacatgattaattacatttttccctttataactctaattaataccactttc 5245436  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| |  ||||||||||||||||||||| ||||||||||| |||||||||||| |  ||| ||||||| |||| |||||||||||||||| ||||     
T  5245437 ---atcactctcaattcaatatattccactttgtatttatgatattggagaatacacca--atacttaacaagagcacttaaaactatttttctctctcc 5245531  T
Q  231 ttcatttatacatttgt 247  Q
    ||||| |||||||||||    
T  5245532 ttcatgtatacatttgt 5245548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 26134885 - 26134674
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||||||| |||| | |||||||||||| ||||||| |||||||||||||||||| |||       | |||||||||||||||| | ||||        
T  26134885 ttttcaataaaaaagtgttctaaaataagtgagtcatttcacttttcaatacatcattaactacttttttccttttataactctaattagtactactttc 26134786  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| | ||||||||||||||| ||||||  |||||||||||||||||||| ||||  ||| ||||||| |||| ||||||| |||||||| ||||     
T  26134785 ---atcactcccaattcaatatatttcactttgcatttatgatagtggagaatagacta--atacttaacaagagcacttaaaacaatttttctctctcc 26134691  T
Q  231 ttcatttatacatttgt 247  Q
    |||||||||||||||||    
T  26134690 ttcatttatacatttgt 26134674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 54122301 - 54122195
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||| ||| |  ||| ||||||| | || |||||||||||||||| |||| ||||||||    
T  54122301 ttccaattcaatatatttcactttgcatttatgatagtggagaatgcacca--atacttaacaaaaacatttaaaactatttttctctctccttcattta 54122204  T
Q  239 tacatttgt 247  Q
    |||||||||    
T  54122203 tacatttgt 54122195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 9017826 - 9017935
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||| ||||||||||||||||| ||||||  |||||| |||||||||||| ||| ||||   ||||||| |||| |||||||||||||||| |||| |||    
T  9017826 atcacttccaattcaatatatttcactttgcatttataatagtggagaatgcaccaatac--ttaacaaaagcacttaaaactatttttctctctctttc 9017923  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  9017924 atttatacattt 9017935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 245
Target Start/End: Complemental strand, 32827415 - 32827277
Alignment:
Q  102 cctttataactctaattaatgctacnnnnnnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaaca 201  Q
    |||||||||||||||||||| ||||       |||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||| |  |||  |||||    
T  32827415 cctttataactctaattaatactactttc---atcatttctaattcaatatatttcactttacatttatgatagtggagaatgcacca--atacgtaaca 32827321  T
Q  202 acagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |  ||| |||||||||||||| | |||| |||||||||||||||    
T  32827320 agtgcacttaaaactatttttttctctccttcatttatacattt 32827277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 33994693 - 33994791
Alignment:
Q  145 ttcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacatt 244  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| |  ||| |||||||  ||| |||||| ||||||||| |||| ||||||||||||||    
T  33994693 ttcaatatattccactttacatttatgatagtggagaatgcacca--atacttaacaagtgcacttaaaattatttttctctctccttcatttatacatt 33994790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 37041955 - 37041891
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatattta 198  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| |||||    
T  37041955 atcatttccaattcaatatatttcactttatatttatgatagtggagaatagaccaatacattta 37041891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 54493850 - 54494034
Alignment:
Q  47 gtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaatt 146  Q
    |||||||||||| |||| ||||||| |||||| ||||  |||||||||       |||||||||||||||||||| ||||       |||||||||||||    
T  54493850 gtcccaaaataactgagccatttcacttttca-tacaatattaattacttttttccctttataactctaattaatactactttc---atcatttccaatt 54493945  T
Q  147 caatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattt 237  Q
     |||||||| ||||||| ||||||||||||||||||||| | |  ||| |||||||  ||| |||||||||| ||||| |||  |||||||    
T  54493946 taatatatttcactttacatttatgatagtggagaatacgcca--atacttaacaagtgcacttaaaactatatttctctcttcttcattt 54494034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 54782988 - 54783097
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||||||||||||||||||| ||||||| ||||||||||| | | ||| ||| |  ||| |||| ||  ||| |||||||||||||||| ||||||||    
T  54782988 atcatttccaattcaatatatttcactttacatttatgatagcgcataatgcacca--atacttaagaagtgcacttaaaactatttttctctctcattc 54783085  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  54783086 atttatacattt 54783097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 15280550 - 15280683
Alignment:
Q  51 caaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaattcaat 150  Q
    ||||||||||||   |||||| ||||||||||||||||||||||       | |||||||| ||||||||| ||||       |||| | ||||||||||    
T  15280550 caaaataagtgaataatttcacttttcaatacatcattaattacttttttccttttataaccctaattaatactactttc---atcactcccaattcaat 15280646  T
Q  151 atattccactttatatttatgatagtggagaatacac 187  Q
    ||||||||||||  |||||||||||||||||||||||    
T  15280647 atattccactttccatttatgatagtggagaatacac 15280683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 39365191 - 39365071
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||  |||||||||       |||||||||||||||||||| |||        |||||    
T  39365191 aaaaaagtgtcccaaaataactgagccatttcaattttcaatacaatattaattactttttcccctttataactctaattaatacta---ttttcatcat 39365095  T
Q  139 ttccaattcaatatattccacttt 162  Q
    | ||||||||||||||||||||||    
T  39365094 tcccaattcaatatattccacttt 39365071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 43639593 - 43639487
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    ||||||||||||||||| ||||||  ||||||||||||||| ||| ||  ||||   |||||||||||| ||||||| |||||||| |||| ||||||||    
T  43639593 ttccaattcaatatatttcactttgcatttatgatagtggaaaatgcatcaatac--ttaacaacagcacttaaaaccatttttctctctccttcattta 43639496  T
Q  239 tacatttgt 247  Q
    || ||||||    
T  43639495 tatatttgt 43639487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 39866627 - 39866526
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||| |||| ||||||  ||||||||||||||||||||||| |  ||| ||||||| | || |||||||||||||||| | || |||||||||||    
T  39866627 caattcaatgtatttcactttgcatttatgatagtggagaatacacca--atacttaacaaaatcacttaaaactatttttctctttccttcatttatac 39866530  T
Q  242 attt 245  Q
    ||||    
T  39866529 attt 39866526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 17777066 - 17776967
Alignment:
Q  144 attcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacat 243  Q
    |||||||||||||||||||  ||||||| ||||||||||| |||  | ||| |||| || ||||  |||||| |||||||| ||||||||||||||||||    
T  17777066 attcaatatattccactttgcatttatggtagtggagaatgcac--aaatacttaaaaaaagcacctaaaaccatttttctctctcattcatttatacat 17776969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 19078367 - 19078268
Alignment:
Q  144 attcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacat 243  Q
    |||||||||||||||||||  ||||||| ||||||||||| |||  | ||| |||| || ||||  |||||| |||||||| ||||||||||||||||||    
T  19078367 attcaatatattccactttgcatttatggtagtggagaatgcac--aaatacttaaaaaaagcacctaaaaccatttttctctctcattcatttatacat 19078270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 32023175 - 32023073
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaac-tatttttctatctcattcatttata 240  Q
    ||||||||||||||| |||||  |||||| |||||||||||| ||| |  ||| ||||||| || | ||||||| |||||||||||||| ||||||||||    
T  32023175 caattcaatatattcaactttgcatttataatagtggagaatgcacca--atacttaacaaaagtacttaaaacttatttttctatctccttcatttata 32023078  T
Q  241 cattt 245  Q
    |||||    
T  32023077 cattt 32023073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 41031505 - 41031709
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| ||||| |||||||| |||| ||||||| |||||||||||  |||||||||       | ||||||||| |||||||| ||||       |||||    
T  41031505 aaaaaagtgtcgcaaaataattgagtcatttcacttttcaatacaatattaattacttttttccatttataactttaattaatactactttc---atcat 41031601  T
Q  139 ttccaattcaatatattccactttatat---ttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcat 235  Q
    ||||||||||||||||| ||||||| ||   ||||||||||||| ||| ||| |  ||| |||||||  ||| |||||||||||||||| |||  ||| |    
T  41031602 ttccaattcaatatatttcactttacatttattatgatagtggaaaatgcacca--atacttaacaagtgcacttaaaactatttttctttcttcttctt 41031699  T
Q  236 ttatacattt 245  Q
    | ||||||||    
T  41031700 tcatacattt 41031709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 46786056 - 46785975
Alignment:
Q  141 ccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactattttt 222  Q
    ||||||||||||||| ||||||  |||||||||||||||||||| || |||| | ||||||| | || ||||||||||||||    
T  46786056 ccaattcaatatatttcactttgcatttatgatagtggagaatataccaatacacttaacaagatcatttaaaactattttt 46785975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 10855027 - 10855128
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  |||||||| |||||| ||| ||| |||| ||  || || | || |||||||||||||||| |||| |||||||||||    
T  10855027 caattcaatatattccactttgcatttatgagagtggataatgcaccaatacat--aataaaaacacttaaaactatttttctctctccttcatttatac 10855124  T
Q  242 attt 245  Q
    ||||    
T  10855125 attt 10855128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 53876510 - 53876409
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||| ||||||| ||||||||||||||| ||| |||  | ||||||||||| |||| ||||||  |||||| |  ||| |||||||||||    
T  53876510 caattcaatatatttcactttacatttatgatagtggaaaatgcac--aaatatttaacaaaagcacttaaaatcatttttttcactccttcatttatac 53876413  T
Q  242 attt 245  Q
    ||||    
T  53876412 attt 53876409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 21296580 - 21296474
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||||||||||||| |||||  ||||||||||||| | ||| ||| |  ||| ||||||| |||| ||||||  ||||| || |||| ||||||||    
T  21296580 ttccaattcaatatattctactttgcatttatgatagtgaaaaatgcacca--atacttaacaagagcatttaaaatcattttcctctctccttcattta 21296483  T
Q  239 tacatttgt 247  Q
    |||||||||    
T  21296482 tacatttgt 21296474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 48744284 - 48744333
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaat 183  Q
    ||||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  48744284 atcattttcaattcaatatatttcactttacatttatgatagtggagaat 48744333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 55415513 - 55415412
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||||| |  |||||| |||||||||||||  ||||| ||| ||||   ||||||| | |||||||||| |||||||| ||||||| ||||||||    
T  55415513 caattcaatatgtgtcactttgtatttatgatagtaaagaatgcaccaatac--ttaacaaaaacagttaaaaccatttttctctctcatttatttatac 55415416  T
Q  242 attt 245  Q
    ||||    
T  55415415 attt 55415412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 21585592 - 21585530
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaatta 93  Q
    ||||||||||||| |||||||||||||| |||| ||||||| ||| |||||||  ||||||||    
T  21585592 ttttcaataaaaaagtgtcccaaaataactgagtcatttcactttccaatacaatattaatta 21585530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 2868606 - 2868708
Alignment:
Q  141 ccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttata 240  Q
    ||||||| || |||||||||||  |||||||| |||||||||| ||  |||| ||  ||||| || | ||||||| |||||||| |||| ||||||||||    
T  2868606 ccaattcgatttattccactttgcatttatgacagtggagaatgcagcaatacat--aacaaaagaacttaaaaccatttttctctctccttcatttata 2868703  T
Q  241 cattt 245  Q
    |||||    
T  2868704 cattt 2868708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 11251178 - 11251100
Alignment:
Q  165 atttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    ||||||||||||||||||| ||| ||||   ||||||| |||| ||||||  |||||| | ||||||||||||||||||||    
T  11251178 atttatgatagtggagaatgcaccaatac--ttaacaagagcacttaaaatcatttttttctctcattcatttatacattt 11251100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 54458383 - 54458342
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaat 183  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  54458383 caattcaatatattccactttacatttatgataatggagaat 54458342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 14756196 - 14756087
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    ||||||| ||||| ||||||||| |||||  |||||||||||||||||||  || |   || ||||||| |||| |||||| ||||||||| |||| ||     
T  14756196 atcattttcaatttaatatattctactttgcatttatgatagtggagaatgtacca--gtacttaacaagagcacttaaaattatttttctctctccttt 14756099  T
Q  234 atttatacattt 245  Q
    | ||||||||||    
T  14756098 aattatacattt 14756087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 45392115 - 45392224
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||||||||||||||||||| ||||||| ||||| |||||| || ||| ||| |  ||| |||||||   || |||||||||||| ||| |||| ||     
T  45392115 atcatttccaattcaatatatttcactttacatttacgatagtagataatgcacca--atagttaacaaattcacttaaaactatttctctttctccttt 45392212  T
Q  234 atttatacattt 245  Q
    ||||||| ||||    
T  45392213 atttatatattt 45392224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 52325210 - 52325311
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  ||||||||||| | ||||| ||| |||| |  |||||| | || | |||||  |||||||||||| || ||||||||    
T  52325210 caattcaatatattccactttgcatttatgatagcgtagaatgcaccaataca--taacaataacactaaaaaccctttttctatctcctttatttatac 52325307  T
Q  242 attt 245  Q
    ||||    
T  52325308 attt 52325311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 1772156 - 1772079
Alignment:
Q  166 tttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    ||||||||||||||||||| || ||||   ||||||| | || ||||||| |||||||| |||| || ||||||||||||    
T  1772156 tttatgatagtggagaatataccaatac--ttaacaagaacacttaaaaccatttttctctctcctttatttatacattt 1772079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 36097729 - 36097632
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  |||| | | |||||||||| |||  |||   ||||||| || | ||||||| |||||||| |||| |||||||||||    
T  36097729 caattcaatatattccactttgcatttctaacagtggagaatgcaccgatac--ttaacaagagtacttaaaaccatttttctctctccttcatttatac 36097632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 44219110 - 44219066
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaat 183  Q
    |||||||||||||||||| ||||| ||||||||||| ||| ||||    
T  44219110 ttccaattcaatatattctactttgtatttatgataatggggaat 44219066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 293
Target Start/End: Complemental strand, 41710326 - 41710061
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||||||| |||||||||||||||||||  |||||| ||||||||||||||||||||||       ||||||||||||||||||||  |||        
T  41710326 ttttcaataaaaaagtgtcccaaaataagtgagctatttcacttttcaatacatcattaattacttttttccctttataactctaattaatattac---t 41710230  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| | ||||||||||||||||||||||  ||||||||||||||| |||| || |  ||| ||||||| |||| ||||||| |||||| | |||      
T  41710229 ttcatcactcccaattcaatatattccactttgcatttatgatagtggaaaatagacca--ataattaacaagagcacttaaaaccatttttttctctgc 41710132  T
Q  231 ttcatttatacatttgt---------tgtgatttgagcaaaatagctcggttaatccgggacaaatggagta 293  Q
    |||||||||||||||||         |||||||||||| |||| |||||||||||||||||| || ||||||    
T  41710131 ttcatttatacatttgtcttaatatgtgtgatttgagc-aaatggctcggttaatccgggacgaagggagta 41710061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 42024383 - 42024172
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||||||| |||||| || |||| |||| ||||||| |||||||||||||||||||||        ||||||||||| |||||||| ||||        
T  42024383 ttttcaataaaaaagtgtcctaagataaatgagtcatttcacttttcaatacatcattaattatttttttccctttataactataattaatactactttc 42024284  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| ||||||||||||||||||||||||  |||||| ||||||||||||| || |  ||| ||||||| || ||||||||| |||||||| ||||     
T  42024283 ---atcacttccaattcaatatattccactttgcatttataatagtggagaatagacca--atacttaacaagagtagttaaaaccatttttctctctcc 42024189  T
Q  231 ttcatttatacatttgt 247  Q
    |||||||||||||||||    
T  42024188 ttcatttatacatttgt 42024172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 40 - 247
Target Start/End: Original strand, 49306521 - 49306723
Alignment:
Q  40 aaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatt 139  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||        |||||||||||||||||||| ||||       |||| |    
T  49306521 aaaaagtgtcccaaaataagtgagccatttcacttttcaatacatcattaattattttttttcctttataactctaattaatactactttc---atcact 49306617  T
Q  140 tccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttat 239  Q
     | ||||||||||||||||||||  ||||||||||| |||||||| || ||||   ||||||| |||| ||||||| |||||||| |||| |||||||||    
T  49306618 cctaattcaatatattccactttgcatttatgataggggagaatagaccaatac--ttaacaagagcacttaaaaccatttttctctctctttcatttat 49306715  T
Q  240 acatttgt 247  Q
    ||||||||    
T  49306716 acatttgt 49306723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 42185978 - 42185767
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    |||||||||||||  |||||||||||||||||| ||||| | ||||||||||||||||||||||       | |||||||||||||||||| ||||        
T  42185978 ttttcaataaaaaaatgtcccaaaataagtgagtcattttacttttcaatacatcattaattacttttttccatttataactctaattaatactactttc 42185879  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| |  |||||||||||||| ||| || |||||||||||||||| |||| || ||||   ||||||| |||| ||||||  |||||||||||||     
T  42185878 ---atcactctcaattcaatatatttcaccttgtatttatgatagtggataatagaccaatac--ttaacaagagcacttaaaatcatttttctatctcc 42185784  T
Q  231 ttcatttatacatttgt 247  Q
    |||||||||||||||||    
T  42185783 ttcatttatacatttgt 42185767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 54729558 - 54729457
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||  ||| ||||||| | || |||||||||||||||| |||| |||||||||||    
T  54729558 caattcaatatattccactttgcatttatgatagtggagaatacacta--atacttaacaaaaacacttaaaactatttttctctctctttcatttatac 54729461  T
Q  242 attt 245  Q
    ||||    
T  54729460 attt 54729457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 245
Target Start/End: Original strand, 39979726 - 39979914
Alignment:
Q  52 aaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaattcaata 151  Q
    ||||||| ||||  |||||| |||||||||||  |||||||||       ||||||||||||||||||||  |||       ||||||||||||||||||    
T  39979726 aaaataattgagttatttcacttttcaatacaatattaattactttttcccctttataactctaattaatattactttc---atcatttccaattcaata 39979822  T
Q  152 tattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||||||| ||||||||||||||||||| |||    ||| |||||||  ||| |||||||||||||||| |||  |||||||||||||||    
T  39979823 tattccactttacatttatgatagtggagaatgcac--cgatacttaacaagtgcacttaaaactatttttctttctacttcatttatacattt 39979914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 247
Target Start/End: Complemental strand, 18849926 - 18849730
Alignment:
Q  46 tgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaat 145  Q
    ||||||||||||| |||| ||||||| ||||||||| |  |||||||||       ||||||||||||||||||||  |||       |  | |||||||    
T  18849926 tgtcccaaaataactgagtcatttcacttttcaataaaatattaattacttttttccctttataactctaattaatattactttc---acaacttccaat 18849830  T
Q  146 tcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||||| ||||||  ||||||||||||||||||| ||| |  ||| ||||||| |||| ||||||| || ||||| |||| |||||||||||||||    
T  18849829 tcaatatatttcactttgcatttatgatagtggagaatgcacca--atacttaacaagagcacttaaaaccatatttctttctccttcatttatacattt 18849732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 49812169 - 49812363
Alignment:
Q  46 tgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaat 145  Q
    ||||||||||||| |||| ||||||| |||||||||||  ||||||||        |||||||||||||||||||| |||        ||| || |||||    
T  49812169 tgtcccaaaataactgagtcatttcacttttcaatacaatattaattatttttttccctttataactctaattaatacta---ttttcatctttcccaat 49812265  T
Q  146 tcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
     ||||||||||||||||| ||||||||||||||| ||| ||| |  ||| |||||||  ||| |||||||||||||| | |||| |||||||||| ||||    
T  49812266 acaatatattccactttacatttatgatagtggataatgcacca--atacttaacaagtgcacttaaaactatttttttctctccttcatttataaattt 49812363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 1825330 - 1825219
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaat-atatttaacaacagcagttaaaactatttttctatctcatt 232  Q
    ||||||| |||||||||||||||||||||| |||||||| ||| |||||| || || | ||| |||||||  ||| ||||||||||||||||||||| ||    
T  1825330 atcattttcaattcaatatattccactttacatttatgaaagttgagaatgca-tactaatacttaacaagtgcacttaaaactatttttctatctcctt 1825232  T
Q  233 catttatacattt 245  Q
     ||||||||||||    
T  1825231 tatttatacattt 1825219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 33047431 - 33047626
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| |||||||||||||| |||| ||||||| |||||||||||  |||||||||         |||||||||||||| ||| |||        ||||     
T  33047431 aaaaaagtgtcccaaaataactgagtcatttcacttttcaatacaatattaattacattttt---tttataactctaatcaatacta------tcatcac 33047521  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  || |  ||| ||||||| |||| ||||||| |||||||| |||  ||  ||||    
T  33047522 ttccaattcaatatattccactttgtatttatgatagtggagaatctacca--atacttaacaaaagcacttaaaaccatttttctctcttctttgttta 33047619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 42544142 - 42544292
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| |||||  ||||||| |||| ||||||| |||||||||||||||||| |||       ||||||||||||||||||||  |||       ||||     
T  42544142 aaaaaagtgtcataaaataaatgagtcatttcacttttcaatacatcattaactactttttttcctttataactctaattaatattactttt---atcac 42544238  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    |  |||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  42544239 tcacaattcaatatattccactttgcatttatgatagtggagaatagactaata 42544292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 4360482 - 4360385
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  ||||||| ||||||||||| ||| |  ||| ||||||| |||| ||||||| |||||||| | ||||||||||||||    
T  4360482 caattcaatatattccactttgcatttatgctagtggagaatgcacca--atacttaacaaaagcacttaaaaccatttttctctttcattcatttatac 4360385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 9093840 - 9093751
Alignment:
Q  138 tttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctc 229  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| |||  | ||| |||||||  ||| |||||||||||||||| ||||    
T  9093840 tttccaatttaatatattccactttacatttatgatagtggagaatgcac--aaatacttaacaagtgcacttaaaactatttttctctctc 9093751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 17237076 - 17237177
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  ||||||||||||  ||||| |||||  ||| ||||||| | || |||||||||||||||| |||| ||||||||||     
T  17237076 caattcaatatattccactttgcatttatgatagtaaagaatccacta--atacttaacaaaatcacttaaaactatttttctctctccttcatttatat 17237173  T
Q  242 attt 245  Q
    ||||    
T  17237174 attt 17237177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 41203770 - 41203871
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||||||||||||||| |||||||| ||||| ||||| ||  |  ||| ||||||| |||| | ||||| ||||||||||||| |||||||||||    
T  41203770 caattcaatatattccactttgtatttatggtagtgaagaatgcatca--atacttaacaagagcactaaaaaccatttttctatctccttcatttatac 41203867  T
Q  242 attt 245  Q
    ||||    
T  41203868 attt 41203871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 29644295 - 29644438
Alignment:
Q  46 tgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaat 145  Q
    ||||||||||||| |||||||||||| |||||||||||  |||||| ||       | ||||||||| |||||||| ||||       ||||||  ||||    
T  29644295 tgtcccaaaataactgagacatttcacttttcaatacaatattaataacttttttccttttataactataattaatactactttc---atcattctcaat 29644391  T
Q  146 tcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    ||||||||||| |||||| |||||||||||| |||||| ||||||||    
T  29644392 tcaatatattctactttacatttatgatagtagagaatgcactaata 29644438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 38976987 - 38977126
Alignment:
Q  102 cctttataactctaattaatgctacnnnnnnnatcatttccaattcaatatattccactttatatttatgatagtggag-aatacactaatatatttaac 200  Q
    |||||||||||||||||||| ||||       ||||||| |||||||||||||||||||||| ||||||||||| |||| ||| ||| |  ||| ||||     
T  38976987 cctttataactctaattaatactactttc---atcattttcaattcaatatattccactttacatttatgataggggagaaatgcacca--atacttaag 38977081  T
Q  201 aacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    ||  ||| |||||||||||||||| |||  |||||||||||||||    
T  38977082 aagtgcacttaaaactatttttctctcttcttcatttatacattt 38977126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 48740460 - 48740603
Alignment:
Q  46 tgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaat 145  Q
    |||| |||||||| |||| ||||||| ||||||| |||  |||||||||       ||||||||||||||||||||  |||       |||||||  |||    
T  48740460 tgtctcaaaataactgagtcatttcacttttcaaaacaatattaattacttttttccctttataactctaattaatattactttt---atcatttttaat 48740556  T
Q  146 tcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  48740557 tcaatatattccactttacatttatgatagtggagaatgcaccaata 48740603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 247
Target Start/End: Original strand, 26185121 - 26185318
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnnc-ctttataactctaattaatgctacnnnnnnnatca 137  Q
    ||||| |||||| |||||||||||| |||||||  ||||||||||||||||||||        | ||||||||||||||||||| ||||               
T  26185121 aaaaaagtgtccaaaaataagtgagccatttcacctttcaatacatcattaattattttttttctctttataactctaattaatactac----------- 26185209  T
Q  138 tttc-caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatt 236  Q
    |||| |||| ||| ||||||||| ||  |||||||||||||||||||| || ||||   ||||||| || | ||||||| |||||||| |||| ||||||    
T  26185210 tttctcaatgcaacatattccacgttgcatttatgatagtggagaatagaccaatac--ttaacaagagtatttaaaaccatttttctctctccttcatt 26185307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 43335097 - 43334996
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  |||||  ||| |||||||| |||||  |||||| |||| | || |||||| |||||||||||  |||||||||||||    
T  43335097 caattcaatatattccactttccatttaaaataatggagaatgcacta--atatttgacaagaacacttaaaattatttttctattacattcatttatac 43335000  T
Q  242 attt 245  Q
    ||||    
T  43334999 attt 43334996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 8294964 - 8295163
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| ||||||||||||||  ||| ||||||| |||||||||||  |||||||||       ||||||||||||||||| || ||||        ||||    
T  8294964 aaaaaagtgtcccaaaataaccgagtcatttcacttttcaatacaatattaattacctttttccctttataactctaatttatactactt------tcat 8295057  T
Q  139 ttcc-aattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattt 237  Q
     ||| |||||||||||||  || ||  ||||||||||||||||||| ||| ||||   ||| ||| || | ||||||| |||||||| |||| |||||||    
T  8295058 ctcccaattcaatatattatacattgcatttatgatagtggagaatgcaccaatac--ttatcaagaggacttaaaacaatttttctctctctttcattt 8295155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 29656501 - 29656555
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaatta 93  Q
    ||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  29656501 aaaaaagtgtcccaaaataagtgaaccatttcacttttcaatacatcattaatta 29656555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 51527443 - 51527501
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||| ||||    
T  51527443 atcattttcaattcaatatatttcactttacatttatgatagtggagaatgcaccaata 51527501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 283552 - 283454
Alignment:
Q  141 ccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttata 240  Q
    ||||||| ||||||||||||||  |||| | |||||||||||| ||| ||||   ||||||| |||| ||||||| |||||||| |||| ||||||||||    
T  283552 ccaattctatatattccactttgaatttctaatagtggagaatgcacaaatac--ttaacaagagcacttaaaacaatttttctctctccttcatttata 283455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 224
Target Start/End: Complemental strand, 40881367 - 40881186
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||||||| ||||||||||  ||| ||||||| |||||||||||  | |||||||       | |||||||||||||| ||| ||||        ||||    
T  40881367 aaaaatgtgccccaaaataaccgagtcatttcacttttcaatacaatagtaattacttttttccttttataactctaataaatactactt------tcat 40881274  T
Q  139 ttccaattcaata----tattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttct 224  Q
    ||| |||||||||    |||||||||||| ||||||||||||||||||||||  |  |||||||||||  | | ||||||||||||||||    
T  40881273 ttctaattcaatatatttattccactttacatttatgatagtggagaatacatca--atatttaacaaatgtaattaaaactatttttct 40881186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 38861414 - 38861352
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaatta 93  Q
    |||| |||||||| |||| ||||||||| |||| ||||||| || ||||||||||||||||||    
T  38861414 tttttaataaaaaagtgttccaaaataaatgagtcatttcacttctcaatacatcattaatta 38861352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 44020844 - 44020786
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    |||||||| |||||||||| |||||||||| ||||||||||||||| ||| ||| ||||    
T  44020844 atcatttctaattcaatatgttccactttacatttatgatagtggataatgcaccaata 44020786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 42367874 - 42367923
Alignment:
Q  196 ttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||  ||| |||||||||||||||| ||||||||||||||||||||    
T  42367874 ttaacaagtgcacttaaaactatttttctctctcattcatttatacattt 42367923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 27977180 - 27977281
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  |||||| |||||||||||| ||| |  ||| ||||||| | || ||||||  |||||||  ||| ||| ||||||||    
T  27977180 caattcaatatattccactttgcatttataatagtggagaatgcacca--atacttaacaaaaacacttaaaatcatttttcactctaatttatttatac 27977277  T
Q  242 attt 245  Q
    ||||    
T  27977278 attt 27977281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 38160226 - 38160125
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||| |||||| ||||||||||| |||||||| ||  |  |||||| ||||   || ||||||| |||||||| |||| || ||||||||    
T  38160226 caattcaatatatttcactttgtatttatgataatggagaatgcatca--atatttgacaaagacacttaaaacaatttttctctctcctttatttatac 38160129  T
Q  242 attt 245  Q
    ||||    
T  38160128 attt 38160125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 3686044 - 3686147
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactattttt--ctatctcattcatttat 239  Q
    ||||||||||||||| |||||  |||||| |||||||||||| ||| |  ||| ||||||| || | |||||||| |||||  ||||||| |||||||||    
T  3686044 caattcaatatattcaactttgcatttataatagtggagaatgcacca--atacttaacaaaagtacttaaaacttttttttcctatctccttcatttat 3686141  T
Q  240 acattt 245  Q
    | ||||    
T  3686142 atattt 3686147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 25149481 - 25149516
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgata 174  Q
    ||||||||||||||||||||||||| ||||||||||    
T  25149481 ttccaattcaatatattccactttacatttatgata 25149516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 28974342 - 28974442
Alignment:
Q  145 ttcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacatt 244  Q
    ||||||||||||| ||||  |||||||||| |||||||| ||| |  ||| ||||||||| || ||||||| | |||| | || | ||||||||||||||    
T  28974342 ttcaatatattcccctttgcatttatgataatggagaatgcacca--atacttaacaacaacacttaaaaccacttttatctccctttcatttatacatt 28974439  T
Q  245 tgt 247  Q
    |||    
T  28974440 tgt 28974442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 8065569 - 8065644
Alignment:
Q  145 ttcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactattttt 222  Q
    |||||||||| |||||||| |||||||||||| |||||| ||| |  ||| |||||||  ||| ||||||||||||||    
T  8065569 ttcaatatataccactttacatttatgatagtagagaatgcacca--atacttaacaagtgcacttaaaactattttt 8065644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 22872462 - 22872412
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    |||||||||||||||||||||  |||||||||| |||||||| ||| ||||    
T  22872462 caattcaatatattccactttgcatttatgataatggagaatgcaccaata 22872412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 25902542 - 25902508
Alignment:
Q  136 catttccaattcaatatattccactttatatttat 170  Q
    ||||||||||||||||||||| |||||||||||||    
T  25902542 catttccaattcaatatattcaactttatatttat 25902508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 51572310 - 51572268
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagt 176  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||    
T  51572310 atcacttccaattcaatatattacactttacatttatgatagt 51572268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 1796319 - 1796282
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagt 176  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  1796319 ttccaattcaatatattccactttgcatttatgatagt 1796282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 41436514 - 41436592
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactattttt 222  Q
    |||||||| |||||| |||||  ||||||||||||||||||| ||| |||| |  |||||| |||| ||||||| ||||||    
T  41436514 caattcaaaatattctactttgcatttatgatagtggagaatgcaccaataca--taacaaaagcacttaaaaccattttt 41436592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 29990546 - 29990514
Alignment:
Q  142 caattcaatatattccactttatatttatgata 174  Q
    ||||||||||||||| |||||||||||||||||    
T  29990546 caattcaatatattcaactttatatttatgata 29990514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 39258346 - 39258243
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaata-tatttaacaacagcagttaaaactatttttctatctcattcatttata 240  Q
    ||||| ||||||||||| |||| ||||||||||||  ||||| ||| |||| |  ||||||| |||| |||||| |  |||||| ||||||||| |||||    
T  39258346 caatttaatatattccattttacatttatgatagtaaagaatgcacgaatagtgcttaacaagagcacttaaaa-tcattttctctctcattcacttata 39258248  T
Q  241 cattt 245  Q
    |||||    
T  39258247 cattt 39258243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 43421330 - 43421374
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaat 183  Q
    ||||||||||||||||| || |||  |||||||||||||||||||    
T  43421330 ttccaattcaatatatttcattttgcatttatgatagtggagaat 43421374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 49448874 - 49448975
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||||||||  |||||  |||||||||| | |||||| |||  | ||| || |||| |||| ||||||| |||||||| |||| |||| ||||||    
T  49448874 caattcaatatattatactttgcatttatgataatagagaatgcac--aaatacttgacaagagcacttaaaaccatttttctctctccttcacttatac 49448971  T
Q  242 attt 245  Q
    ||||    
T  49448972 attt 49448975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 44790597 - 44790393
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncc-tttataactctaattaatgctacnnnnnnnatca 137  Q
    ||||| |||||||||||||| | || ||||||| ||||||||||||||||||||||       || |||||||||||||||||| ||||       | ||    
T  44790597 aaaaaagtgtcccaaaataattaagccatttcacttttcaatacatcattaattactatttttccctttataactctaattaatactactttc---acca 44790501  T
Q  138 tttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattt 237  Q
    || ||||||||||||||||||||||| ||||||||||||||||||| ||| |  ||| |||||||  ||| |||||||||||||||| |||| |||||||    
T  44790500 ttcccaattcaatatattccactttacatttatgatagtggagaatgcacca--atacttaacaagtgcacttaaaactatttttctctctccttcattt 44790403  T
Q  238 atacatttgt 247  Q
    ||||||||||    
T  44790402 atacatttgt 44790393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 247
Target Start/End: Original strand, 28802692 - 28802903
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||||||| ||||| |||||||||| || ||||||| |||||||||||||||||| |||       ||||||||||||||||||||  ||         
T  28802692 ttttcaataaaaaagtgtcacaaaataagtcagccatttcacttttcaatacatcattaactacttttttccctttataactctaattaataata---tt 28802788  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| |  |||||||||||||||||||||  |||||||||||||||||||| |  |  ||| ||||||| |||| ||||||| |||||||| ||||     
T  28802789 ttcatcactctcaattcaatatattccactttgcatttatgatagtggagaatagatca--atacttaacaagagcacttaaaaccatttttctctctct 28802886  T
Q  231 ttcatttatacatttgt 247  Q
    |||||||||||||||||    
T  28802887 ttcatttatacatttgt 28802903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 38252612 - 38252410
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| |||||||||||||| |||  ||||||| ||||  |||||  |||||||||       |||||||||||||||| ||| ||||       |||||    
T  38252612 aaaaaagtgtcccaaaataactgaaccatttcactttttgatacaatattaattacttttttccctttataactctaatcaatactactttc---atcat 38252516  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaacta-tttttctatctcattcattt 237  Q
    ||||||||||||||||||||||||| |||||||| |||||||||| |||||  ||| |||||||  ||| ||||||||| ||||||| |||| |||||||    
T  38252515 ttccaattcaatatattccactttacatttatgacagtggagaatgcacta--atacttaacaagtgcacttaaaactattttttctctctccttcattt 38252418  T
Q  238 atacattt 245  Q
    ||||||||    
T  38252417 atacattt 38252410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 22325037 - 22324928
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||  |||||||||||   || |||||| ||||||||| |||| |||    
T  22325037 atcattttcaattcaatatattccactttacatttatgatagtggaaaatgcacta--atatttaacaagtacacttaaaattatttttctctctccttc 22324940  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  22324939 atttatacattt 22324928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 247
Target Start/End: Original strand, 5391981 - 5392185
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncc-tttataactctaattaatgctacnnnnnnnatca 137  Q
    ||||| ||||| |||||||| |||| ||||||| |||||||||||  |||||||||       || |||||||||||||||||| ||||       | ||    
T  5391981 aaaaaagtgtctcaaaataactgagtcatttcacttttcaatacaatattaattactttttttccctttataactctaattaatactactttc---aaca 5392077  T
Q  138 tttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattt 237  Q
     | ||||||||||||||||||||||  ||||||||||||||||||| ||| |  ||| || |||| |||| ||||||| |||||||| |||| |||||||    
T  5392078 ctcccaattcaatatattccactttgcatttatgatagtggagaatgcacca--atacttgacaaaagcacttaaaaccatttttctctctccttcattt 5392175  T
Q  238 atacatttgt 247  Q
    ||||||||||    
T  5392176 atacatttgt 5392185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 42412458 - 42412356
Alignment:
Q  141 ccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttata 240  Q
    ||||||||||||||||||||||  |||||||||| |||||||| ||| ||||||  | |||| |||| |||||||||||||||| ||||||||| |||||    
T  42412458 ccaattcaatatattccactttgcatttatgataatggagaatgcaccaatata--tgacaagagcacttaaaactatttttctctctcattcacttata 42412361  T
Q  241 cattt 245  Q
    |||||    
T  42412360 cattt 42412356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 2349377 - 2349485
Alignment:
Q  136 catttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaacta-tttttctatctcattca 234  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||| |||  | ||| |||||||  ||| ||||||||| ||||||| |||| ||||    
T  2349377 catttccaattcaatatattccaatttacatttatgatagtggagaatgcac--aaatacttaacaaatgcacttaaaactattttttctctctccttca 2349474  T
Q  235 tttatacattt 245  Q
    |||||||||||    
T  2349475 tttatacattt 2349485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 5962648 - 5962446
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacattt-caattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatca 137  Q
    ||||| |||||| ||||||| |||| ||||| || ||| |||||||| |||||||||       ||||||||||||||||||||  ||        ||||    
T  5962648 aaaaaagtgtcctaaaataactgagtcattttcactttccaatacattattaattactttttcccctttataactctaattaatatta---atttcatca 5962552  T
Q  138 tttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattt 237  Q
     | ||||||||||||||||||||||  |||||| |||||||||||| ||| |  ||| ||||||| |||| |||||||  |||||||||||| |||||||    
T  5962551 ctcccaattcaatatattccactttgcatttataatagtggagaatgcacca--atacttaacaaaagcacttaaaacgttttttctatctccttcattt 5962454  T
Q  238 atacattt 245  Q
    ||||||||    
T  5962453 atacattt 5962446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 12653720 - 12653821
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||| |||||| |||||||| ||| ||| |  |||||||||||  ||| |||||||||||||||| |||  |||||||||||    
T  12653720 caattcaatatattccactttacatttataatagtggataatgcacca--atatttaacaaacgcacttaaaactatttttctctctacttcatttatac 12653817  T
Q  242 attt 245  Q
    ||||    
T  12653818 attt 12653821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 29615823 - 29615932
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||| | ||||| |  ||| |||||||  ||| |||||| ||||||||| |||| |||    
T  29615823 atcattcccaattcaatatattccactttacatttatgacagtggaaagtacacca--atacttaacaagtgcatttaaaattatttttctctctccttc 29615920  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  29615921 atttatacattt 29615932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 245
Target Start/End: Complemental strand, 32967388 - 32967250
Alignment:
Q  102 cctttataactctaattaatgctacnnnnnnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaaca 201  Q
    |||||||||||||||||||| ||||       ||||||  |||||||||||||||||||||| |||||||||||||||||||  || |  ||| |||| |    
T  32967388 cctttataactctaattaatactactttc---atcattctcaattcaatatattccactttaaatttatgatagtggagaatggacca--atacttaaga 32967294  T
Q  202 acagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |  ||| |||||||||||||||| |||  |||||||||||||||    
T  32967293 agtgcacttaaaactatttttctctcttcttcatttatacattt 32967250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 247
Target Start/End: Complemental strand, 33191075 - 33190880
Alignment:
Q  47 gtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaatt 146  Q
    |||||||||||| |||| ||||||| |||||||||||  |||||||||       |||||||||||||||||| | ||||       |  | ||||||||    
T  33191075 gtcccaaaataactgagtcatttcacttttcaatacaatattaattacttttttccctttataactctaattagtactactttc---acaacttccaatt 33190979  T
Q  147 caatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacatttg 246  Q
    |||||||||||||| |  ||||||||||||||||||| || ||  ||| ||||||| | || ||||||  |||||||| |||  ||||||||||||||||    
T  33190978 caatatattccactatgcatttatgatagtggagaatgcatta--atacttaacaagaacacttaaaatcatttttctctcttcttcatttatacatttg 33190881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 42558763 - 42558554
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||||||||||| ||   |||||||||||||| ||||||| |||||||||||||||||||||          |||| ||||||||||||| ||||        
T  42558763 ttttcaataaaaaagttctccaaaataagtgagtcatttcacttttcaatacatcattaattatttttttctttttacaactctaattaatactactttc 42558664  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| |   ||||||||||||||||||||  |||||||||||||||||||| || |  ||| ||||||| | || ||||||| |||| ||  ||||     
T  42558663 ---atcactcttaattcaatatattccactttgcatttatgatagtggagaataaacca--atacttaacaagaacaattaaaaccatttatc--tctcc 42558571  T
Q  231 ttcatttatacatttgt 247  Q
    |||||||||||||||||    
T  42558570 ttcatttatacatttgt 42558554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 12958051 - 12957954
Alignment:
Q  146 tcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||||| |  ||| || |||| ||||||| |||||||||| ||   |||||||||||||    
T  12958051 tcaatatattccactttgtatttatgatagttgagaatgcactaataga--taataagagcacttaaaaccatttttctatttccaacatttatacattt 12957954  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 34287253 - 34287121
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    |||||||||| ||||||||| |||| ||||||| ||||||||||| ||||||| ||       ||||||||| ||||||||||  |||       |||||    
T  34287253 aaaaatgtgttccaaaataactgagtcatttcacttttcaatacaacattaatcactttttttcctttataattctaattaatattac---tttcatcat 34287157  T
Q  139 ttccaattcaatatattccactttatatttatgata 174  Q
    ||| ||||||||||||||||||||| ||||| ||||    
T  34287156 ttctaattcaatatattccactttacatttacgata 34287121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 4274373 - 4274270
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||| ||||||  ||||||||||| |||||||| ||    ||||||||| | |||| |||||| ||||||||| |||  |||||||||||    
T  4274373 caattcaatatatttcactttgcatttatgataggggagaatagac--cgatatttaacgaaagcacttaaaattatttttctctcttcttcatttatac 4274276  T
Q  242 atttgt 247  Q
    ||||||    
T  4274275 atttgt 4274270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 31410681 - 31410587
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttat 239  Q
    ||||||||||||||||||||  ||||||||||||| | ||| ||| |  ||||||||||| | || |||||||| ||||||| |||| |||||||||    
T  31410681 aattcaatatattccactttgcatttatgatagtgtataatgcacca--atatttaacaaaaacacttaaaactgtttttctctctccttcatttat 31410587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 33746301 - 33746192
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||||  |||||||||||||||  ||||||||||| |||||||||| | |||||  ||| |||| ||  ||| |||||| ||||||||| | || |||    
T  33746301 atcatttttaattcaatatattcctttttatatttatcatagtggagattgcacta--atacttaataagtgcacttaaaattatttttctttttctttc 33746204  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  33746203 atttatacattt 33746192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 34133152 - 34133256
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    ||||| |||||||||||||||| || |||| ||||||||||||||||||| | | |  ||| |||||||  ||| |||||| ||||||||| |||| ||     
T  34133152 atcatatccaattcaatatatttcattttacatttatgatagtggagaatgcgcca--atacttaacaagtgcacttaaaattatttttctctctccttt 34133249  T
Q  234 atttata 240  Q
    |||||||    
T  34133250 atttata 34133256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 45425510 - 45425617
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||| | |||| |||||||||||||||  ||||||||||||||| ||| ||  |  ||| ||||||| |||| ||||||| |||| ||| |||| |||    
T  45425510 atcattcctaatttaatatattccactttgcatttatgatagtggaaaatgcatca--atacttaacaagagcacttaaaaccatttgtctctctccttc 45425607  T
Q  234 atttatacat 243  Q
    ||||||||||    
T  45425608 atttatacat 45425617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 22490424 - 22490465
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaat 183  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  22490424 caattcaatatattccactttgtatttatgatagtgaagaat 22490465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 32241501 - 32241395
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||||| |||||||||||||  ||||||||||||| ||||| ||  |  ||| ||||||| | || ||||||  |||||| | |||| ||||||||    
T  32241501 ttccaattcattatattccactttgcatttatgatagtgaagaatgcatca--atacttaacaagaacacttaaaatcatttttatctctccttcattta 32241404  T
Q  239 tacatttgt 247  Q
    |||||||||    
T  32241403 tacatttgt 32241395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 139055 - 139156
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||| |||||||||||||  ||||||||||| ||| ||| ||| |  ||| ||||||| || | ||||||  |||||| | ||||||||||||||||    
T  139055 caattcattatattccactttgcatttatgatagcggaaaatgcacca--atacttaacaagagaatttaaaatcatttttatctctcattcatttatac 139152  T
Q  242 attt 245  Q
    ||||    
T  139153 attt 139156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 325190 - 325158
Alignment:
Q  142 caattcaatatattccactttatatttatgata 174  Q
    |||||||||||||||||||||||||||||||||    
T  325190 caattcaatatattccactttatatttatgata 325158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 67203 - 67241
Alignment:
Q  1 tagaaaatggttgtacaaatatcagttatcttttcaata 39  Q
    |||||||||||||||||||||||| || |||||||||||    
T  67203 tagaaaatggttgtacaaatatcatttctcttttcaata 67241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 29730975 - 29730869
Alignment:
Q  139 ttccaattcaatatat--tccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatt 236  Q
    ||||||||||||||||  || |||||  ||||||||||||||||||| ||| |  ||| ||||||| | || ||||||| | |||||| |||| ||||||    
T  29730975 ttccaattcaatatatattctactttgcatttatgatagtggagaatgcacca--atacttaacaagaacacttaaaaccacttttctctctccttcatt 29730878  T
Q  237 tatacattt 245  Q
    |||| ||||    
T  29730877 tatatattt 29730869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 13085015 - 13084921
Alignment:
Q  149 atatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    ||||||||||||||  ||||||||| || |||||| ||| ||||   ||||||| | || |||||||||||||| | |||| |||||||| ||||||    
T  13085015 atatattccactttgcatttatgattgtagagaatgcaccaataa--ttaacaagaacacttaaaactatttttgtctctccttcatttacacattt 13084921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 4480531 - 4480443
Alignment:
Q  154 ttccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    ||||||||| | ||||||||| |||||||| ||| |||| ||  ||||| || | |||||| ||||||||| |||| |||||||||||||||    
T  4480531 ttccactttgtgtttatgatactggagaatgcaccaatacat--aacaaaagtatttaaaa-tatttttctctctctttcatttatacattt 4480443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 31 - 247
Target Start/End: Original strand, 33988124 - 33988336
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagac-atttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnn 129  Q
    ||||||||||||| |||||||||||||||||||   |||||| ||||||||||||||||||||||       ||||||||||||||||| ||  |||       
T  33988124 ttttcaataaaaaagtgtcccaaaataagtgagtttatttcacttttcaatacatcattaattacttgtttccctttataactctaattcatattacttt 33988223  T
Q  130 nnnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctc 229  Q
        || | | ||||||||||||||||||||||| ||||||||||||||||||||||| |  ||| ||||||| | || ||||||| |||||||| ||||    
T  33988224 c---attactcccaattcaatatattccactttacatttatgatagtggagaatacacca--atacttaacaaaaacacttaaaaccatttttctttctc 33988318  T
Q  230 attcatttatacatttgt 247  Q
     |||||||||||||||||    
T  33988319 cttcatttatacatttgt 33988336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 35334701 - 35334498
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||        | |||||||||||||||||| ||||       ||||     
T  35334701 aaaaaagtgtcccaaaataagtgagccatttcacttttcaatacatcattaattatttttttccttttataactctaattaatactactttc---atcac 35334605  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    | ||||||||||||||||||||||  |||||||||||||||||||| ||  | ||| |||| || |||| |||||||||||||||| |||| ||||||||    
T  35334604 tcccaattcaatatattccactttgcatttatgatagtggagaatagac--aaatacttaataagagcacttaaaactatttttctctctccttcattta 35334507  T
Q  239 tacatttgt 247  Q
    || ||||||    
T  35334506 tatatttgt 35334498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 11099645 - 11099451
Alignment:
Q  46 tgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaat 145  Q
    ||||||||||||| |||| ||||||| ||| |||||||  |||||||||       |||||||||||||||||||| ||||       |||| | |||||    
T  11099645 tgtcccaaaataactgagtcatttcactttccaatacaatattaattactttttcccctttataactctaattaatactactttc---atcactcccaat 11099549  T
Q  146 tcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |  ||| ||||||| | || |||||||||||||||| |||| |||||||||||||||    
T  11099548 tcaatatattccactttgtatttatgatagtggagaatgcacca--atacttaacaaaaacacttaaaactatttttctctctctttcatttatacattt 11099451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 247
Target Start/End: Complemental strand, 42575807 - 42575610
Alignment:
Q  45 gtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaa 144  Q
    ||||||||||||||  ||| ||||||| |||||||||||  |||||||||       ||||||||||| |||||||| ||||       |  | ||||||    
T  42575807 gtgtcccaaaataaccgagccatttcacttttcaatacaatattaattacttttttccctttataactttaattaatactactttc---acaacttccaa 42575711  T
Q  145 ttcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacatt 244  Q
    ||||||||||||||||||  ||||||||||||||||||||||| |  ||| ||| ||| |||| ||||||| |||||||| |||||||||||||||||||    
T  42575710 ttcaatatattccactttgcatttatgatagtggagaatacacca--atacttaccaagagcacttaaaaccatttttctctctcattcatttatacatt 42575613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 17243136 - 17242926
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnn 130  Q
    ||||| ||||||| || ||| ||||||||||||  |||||| |||| |||||||||||||||||       |||||||||||||||||||| ||||        
T  17243136 ttttcgataaaaaagtatcctaaaataagtgagttatttcactttttaatacatcattaattactttttc-cctttataactctaattaatactactttc 17243038  T
Q  131 nnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctca 230  Q
       |||| |  |||||||||||||||||||||  |||||||||||| ||||||| || |  ||| ||||||| || | | ||||| |||||||| |||||    
T  17243037 ---atcactctcaattcaatatattccactttgcatttatgatagtagagaatagacca--atacttaacaagagtactaaaaaccatttttctctctca 17242943  T
Q  231 ttcatttatacatttgt 247  Q
    |||||||||||||||||    
T  17242942 ttcatttatacatttgt 17242926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 7613732 - 7613841
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |  ||| |||||||  ||| |||||||||||||||| | || ||     
T  7613732 atcatttccaattcaatatatttcactttacatttatgatagtggagaatgcacca--atacttaacaagtgcacttaaaactatttttctctttcctta 7613829  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  7613830 atttatacattt 7613841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 25814389 - 25814498
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||| |||  || |  ||| |||||||  ||| |||||||||||||||| |||| |||    
T  25814389 atcatttccaattcaatatatttcactttacatttatgatagtggataatgtacca--atacttaacaagtgcacttaaaactatttttctctctccttc 25814486  T
Q  234 atttatacattt 245  Q
    |||||| |||||    
T  25814487 atttatgcattt 25814498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 35646163 - 35646061
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttataca 242  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||| |  ||| ||||||| | || ||||||  |||||||| ||||||||||||||| |    
T  35646163 aattcaatatattccactttgcatttatgatagtggagaatgcacca--atacttaacaagatcacttaaaatcatttttctctctcattcatttatata 35646066  T
Q  243 tttgt 247  Q
    |||||    
T  35646065 tttgt 35646061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 39008158 - 39008269
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagt----ggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattca 234  Q
    ||||||||||||||||| ||||||| ||||||||||||    |||||||  || ||||   ||||||| |||| ||||||| |||||||| |||| ||||    
T  39008158 ttccaattcaatatatttcactttacatttatgatagttagtggagaatgaaccaatac--ttaacaagagcacttaaaaccatttttctctctccttca 39008255  T
Q  235 tttatacatttgtt 248  Q
    ||||||||||||||    
T  39008256 tttatacatttgtt 39008269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 3725219 - 3725320
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||| |||||||||||| |  ||||||||||||||||||| ||| |  ||| ||||||| |||| ||||||| |||||||| |||| ||| |||||||    
T  3725219 caattcgatatattccactatgcatttatgatagtggagaatgcacca--atacttaacaatagcacttaaaaccatttttctctctccttcctttatac 3725316  T
Q  242 attt 245  Q
    ||||    
T  3725317 attt 3725320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 8369771 - 8369686
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctc 229  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||| |  ||| ||||||| |||| ||||||| |||||||| ||||    
T  8369771 caattcaatatattccactttgcatttatgatagtggagaatgcacca--atacttaacaagagcatttaaaacaatttttctctctc 8369686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 16283662 - 16283561
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  |||||||||||| |||||| ||| |||| |  |||||| | || ||||||| |||||| | |||| |||||||||||    
T  16283662 caattcaatatattccactttgcatttatgatagttgagaatgcaccaataca--taacaaaatcatttaaaaccatttttttctctccttcatttatac 16283565  T
Q  242 attt 245  Q
    ||||    
T  16283564 attt 16283561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 22583046 - 22582844
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||||||||||  |||||| ||||  ||||||||||||||||||  ||||||||         ||||||||||||||||||| ||||       |  |     
T  22583046 aaaaatgtgtccttaaataactgagttatttcaattttcaatacaatattaattatttttttttctttataactctaattaatactactttc---acaac 22582950  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||||||||| |||||||||  ||||||||||||||||||| || | || || ||||||| |||| ||||||  |||||||| ||| |||||||||    
T  22582949 ttccaattcaatat-ttccactttgcatttatgatagtggagaatgca-tcat-tacttaacaagagcacttaaaatcatttttctctcttattcattta 22582853  T
Q  239 tacatttgt 247  Q
    || ||||||    
T  22582852 tatatttgt 22582844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 6610871 - 6610920
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    ||||||||||||| ||||||| ||||||||||||||||||| ||| ||||    
T  6610871 aattcaatatatttcactttacatttatgatagtggagaatgcaccaata 6610920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 8692896 - 8692790
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||| |||||||| || |||  ||||||||||||||||||| ||| |  ||| ||||||| | || ||||||| ||||||||  ||| ||||||||    
T  8692896 ttccaatttaatatatttcattttgcatttatgatagtggagaatgcacca--atacttaacaagaacacttaaaaccatttttctccctccttcattta 8692799  T
Q  239 tacatttgt 247  Q
    || ||||||    
T  8692798 tatatttgt 8692790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 20189925 - 20189966
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaat 183  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  20189925 caattcaatatattccactttacatttatgataatggagaat 20189966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 24231043 - 24231142
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  ||||||| ||||||||||| ||  |  ||| ||||||| | |||||||||  |||||||| ||||||||  ||||||    
T  24231043 caattcaatatattccactttccatttatggtagtggagaatgcatca--atacttaacaagaacagttaaaatcatttttctctctcattc--ttatac 24231138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 39183702 - 39183661
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaat 183  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  39183702 caattcaatatattccactttgcatttatgatagtggagaat 39183661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 13135787 - 13135827
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaat 183  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  13135787 aattcaatatattccactttgcatttatgatagtggagaat 13135827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 36446762 - 36446661
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||||||||  |||||  ||||||||||||||||||| ||| |||| |  |||||| | || ||| ||  |||||| |||||| |||||||||||    
T  36446762 caattcaatatattatactttgcatttatgatagtggagaatgcacaaataca--taacaaaaacacttataatcatttttttatctccttcatttatac 36446665  T
Q  242 attt 245  Q
    ||||    
T  36446664 attt 36446661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 42211366 - 42211463
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||| ||||||  ||||||||||||||| |||||      ||| ||||||| |||| ||||||| ||||||||  | | |||||||||||    
T  42211366 caattcaatatatttcactttgcatttatgatagtggaaaatac------atacttaacaagagcacttaaaaccatttttctcccaccttcatttatac 42211459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 25344813 - 25344762
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatat 193  Q
    ||||||||||||||| |||||| |||||||||| ||| |||| |||||||||    
T  25344813 caattcaatatattctactttacatttatgataatggtgaatgcactaatat 25344762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 36469168 - 36469068
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttataca 242  Q
    |||||||||||||  |||||  ||||||||||||||||||| ||| |||| |  |||||| | || ||| ||  |||||| |||||| ||||||||||||    
T  36469168 aattcaatatattatactttgcatttatgatagtggagaatgcaccaataca--taacaaaaacacttataatcatttttttatctccttcatttataca 36469071  T
Q  243 ttt 245  Q
    |||    
T  36469070 ttt 36469068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 6735440 - 6735382
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    |||| ||| |||| |||||||||||||||  ||||||||||||||||||| ||| ||||    
T  6735440 atcacttcaaatttaatatattccactttgcatttatgatagtggagaatgcacaaata 6735382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 3725116 - 3725173
Alignment:
Q  35 caataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaatt 92  Q
    ||||||||| |||||| ||||||| |||| ||||||| |||||||||||  |||||||    
T  3725116 caataaaaaagtgtcctaaaataactgagtcatttcacttttcaatacaatattaatt 3725173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 8369871 - 8369818
Alignment:
Q  40 aaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaatta 93  Q
    |||| |||||||||||||| |||| ||||||| |||||||||||  ||||||||    
T  8369871 aaaaagtgtcccaaaataactgagccatttcatttttcaatacaatattaatta 8369818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 41184745 - 41184794
Alignment:
Q  196 ttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||  ||| |||||||||||||||| |||| |||||||||||||||    
T  41184745 ttaacaagtgcacttaaaactatttttctttctccttcatttatacattt 41184794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 31196419 - 31196451
Alignment:
Q  211 aaaactatttttctatctcattcatttatacat 243  Q
    ||||||||||||||||||| |||||||||||||    
T  31196419 aaaactatttttctatctctttcatttatacat 31196451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 31265809 - 31265915
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| |  ||| ||||||| |||| |||||||||||||||| |||| ||||||||    
T  31265809 ttccaattcaatatattccactttacatttatgatagtggagaatgcacca--atacttaacaagagcacttaaaactatttttctctctccttcattta 31265906  T
Q  239 tacatttgt 247  Q
    |||||||||    
T  31265907 tacatttgt 31265915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 15081356 - 15081557
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| |||||||||||||| |||   |||||| |||||||||||  |||||||||       |||||||||||||||||||| ||||       || ||    
T  15081356 aaaaaagtgtcccaaaataactgaacaatttcacttttcaatacaatattaattacttttttccctttataactctaattaatactactttc---ataat 15081452  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||||||||||||||||||||  |||||||||||||||||| |||  | ||| |||||||  ||| |||||||||||||||| || | ||||||||    
T  15081453 ttccaattcaatatattccactttacgtttatgatagtggagaatgcac--aaatacttaacaagtgcacttaaaactatttttctctcaccttcattta 15081550  T
Q  239 tacattt 245  Q
    |||||||    
T  15081551 tacattt 15081557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 30064116 - 30063922
Alignment:
Q  46 tgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaat 145  Q
    ||||| ||||||| |||| ||||||| ||| |||||||  |||||||||       ||||||||||||||||||||  |||       |||| | |||||    
T  30064116 tgtcctaaaataactgagtcatttcactttccaatacaatattaattacttttttccctttataactctaattaatattactttc---atcactcccaat 30064020  T
Q  146 tcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||||||||||||  |||||| ||||||||||||||||  | ||| |||| || |||| |||||||| ||||||| |||| |||||||||||||||    
T  30064019 tcaatatattccactttgcatttataatagtggagaatacac--aaatacttaataaaagcacttaaaactttttttctttctccttcatttatacattt 30063922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 7301162 - 7301055
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    ||||||| |||||||||||||||||||||| |||||||||| |||||||| |||  | ||| |||||||   || |||||||||||||||  |||||||     
T  7301162 atcattttcaattcaatatattccactttacatttatgataatggagaatgcac--aaatacttaacaaacacacttaaaactatttttc--tctcattt 7301067  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  7301066 atttatacattt 7301055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 33109406 - 33109507
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||| || |||| ||| | ||||||||||||| ||| |||||  |||||||  ||| |||||||||||||||| |||||||||| |||||    
T  33109406 caattcaatatatttcattttacattaacgatagtggagaatgcacaaatat--ttaacaagtgcatttaaaactatttttctctctcattcatctatac 33109503  T
Q  242 attt 245  Q
    ||||    
T  33109504 attt 33109507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 3604677 - 3604571
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    ||||||||||||||||||||||||  |||||  ||| |||||||| ||| |  ||| ||||||| || | ||||||| |||||||| |||| || |||||    
T  3604677 ttccaattcaatatattccactttgcatttacaataatggagaatgcacca--atacttaacaagagaacttaaaaccatttttctctctcttttattta 3604580  T
Q  239 tacatttgt 247  Q
    |||||||||    
T  3604579 tacatttgt 3604571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 4238454 - 4238553
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||| ||| ||||||| ||||||||||||| ||||| ||| |  ||| ||||||| |||| |||||||||| ||||  |||| |||||||||||    
T  4238454 caattcaatagatttcactttacatttatgatagtgaagaatgcacca--atacttaacaagagcacttaaaactatatttc--tctctttcatttatac 4238549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 9755229 - 9755180
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaat 183  Q
    ||||||| ||||||||||||||| ||| || |||||||||||||||||||    
T  9755229 atcattttcaattcaatatattctactctacatttatgatagtggagaat 9755180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 117112 - 117153
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaat 183  Q
    ||||||||||||||||||||| ||||||||||  ||||||||    
T  117112 caattcaatatattccactttgtatttatgatcatggagaat 117153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 34915886 - 34915837
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    ||||||||||||||||||||  |||||||||| |||||||| ||| ||||    
T  34915886 aattcaatatattccactttgcatttatgataatggagaatgcaccaata 34915837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 7739592 - 7739491
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||||| ||| |||||| |||||| ||| ||| |||| ||  ||||   ||||||| | || || |||||||||||||||||| |||| ||||||    
T  7739592 caattcaatatcttctactttacatttataataatggtgaatgcatcaatac--ttaacaaaaacattttaaactatttttctatctctttcacttatac 7739495  T
Q  242 attt 245  Q
    ||||    
T  7739494 attt 7739491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 435152 - 435053
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||  |||||||||||  ||| |||||||||||||| | |||| |||||||||||    
T  435152 caattcaatatatttcactttacatttatgatagtggagaatgcacta--atatttaacaagtgcacttaaaactatttttgtctctctttcatttatac 435055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 240
Target Start/End: Complemental strand, 28108539 - 28108353
Alignment:
Q  50 ccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncc-tttataactctaattaatgctacnnnnnnnatcatttccaattca 148  Q
    ||||||||| |||| |||| || ||||||||||| ||||||||||       || |||||||||||||||||| ||||       ||||||  |||||||    
T  28108539 ccaaaataactgagccattccacttttcaatacaacattaattactttttttccctttataactctaattaatactactttc---atcattctcaattca 28108443  T
Q  149 atatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttata 240  Q
    ||||||||||||||| || |||||||||||||||| ||| |  ||| |||||||  ||| |||||||||||||||| |||| ||||||||||    
T  28108442 atatattccactttacatgtatgatagtggagaatgcacca--atacttaacaagtgcacttaaaactatttttctctctccttcatttata 28108353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 24775890 - 24775781
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||||  ||||||||||||| ||||||| ||||||||||||||||||||||| |  ||| |||||||  ||| |||||| ||||||||| |||| |||    
T  24775890 atcatttttaattcaatatatttcactttacatttatgatagtggagaatacacca--atacttaacaagtgcacttaaaattatttttctctctccttc 24775793  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  24775792 atttatacattt 24775781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 30757650 - 30757541
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||| ||| || ||  ||| |||||||  ||| |||||||||||||||| |||| |||    
T  30757650 atcattcccaattcaatatattccaatttacatttatgatagtggaaaatgcatta--atacttaacaagtgcacttaaaactatttttctctctccttc 30757553  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  30757552 atttatacattt 30757541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 245
Target Start/End: Complemental strand, 28926010 - 28925821
Alignment:
Q  51 caaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaattcaat 150  Q
    |||||||| |||| ||||||| |||||||||||  |||||||||       ||||||||||||||||||||   ||       |||||| ||||||||||    
T  28926010 caaaataattgagccatttcatttttcaatacaatattaattacttttttccctttataactctaattaat---actgttttgatcattcccaattcaat 28925914  T
Q  151 atattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    ||||| ||||||| | ||||||||||||||||| ||  |  ||| |||||||  ||| |||||||||||||||| |||| || ||||||||||||    
T  28925913 atatttcactttacaattatgatagtggagaatgcatca--atacttaacaagtgcacttaaaactatttttctctctcctttatttatacattt 28925821  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 33751386 - 33751481
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctac 126  Q
    ||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||||||||       |||||||||||||||||||| ||||    
T  33751386 ttttcaataaaaaagtgtccaaaaataaatgagtcatttcacttttcaatacatcattaattacttttttccctttataactctaattaatactac 33751481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 43077808 - 43077697
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    ||||||| |||||||||||||| ||||||| |||||||| |||||| ||| ||| ||||   |||||||   || |||||||||||||||| ||||||||    
T  43077808 atcattttcaattcaatatatttcactttacatttatgacagtggaaaatgcaccaatag--ttaacaagtacatttaaaactatttttctctctcattc 43077711  T
Q  234 atttatacatttgt 247  Q
    ||||||||||||||    
T  43077710 atttatacatttgt 43077697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 28301467 - 28301570
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||| ||||||  |||||||||||||||||||| || |  ||| ||||||| |||| ||||||| |||||||| | || |||||||||||    
T  28301467 caattcaatatatttcactttgcatttatgatagtggagaatagacca--atacttaacaagagcacttaaaaccatttttctctttccttcatttatac 28301564  T
Q  242 atttgt 247  Q
    ||||||    
T  28301565 atttgt 28301570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 2882018 - 2882119
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||| ||||||||| ||||||  ||||||||||||||||||| ||| ||||   ||||||| |||| ||||||  ||||||||||||| |||||||||||    
T  2882018 caatacaatatatttcactttgcatttatgatagtggagaatgcaccaatac--ttaacaagagcacttaaaatcatttttctatctctttcatttatac 2882115  T
Q  242 attt 245  Q
    ||||    
T  2882116 attt 2882119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 23684992 - 23685093
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||| ||||||  ||||||||||||||||||| |||||  ||| ||||||| | || ||||||||| |||||| |||| || ||||||||    
T  23684992 caattcaatatatttcactttgcatttatgatagtggagaatgcacta--atacttaacaaaaacacttaaaactaattttctctctcctttatttatac 23685089  T
Q  242 attt 245  Q
    ||||    
T  23685090 attt 23685093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 41436024 - 41436212
Alignment:
Q  51 caaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcatttccaattcaat 150  Q
    |||||||| |||| ||||||| |||||||||||  |||||||||       | |||||||||||||||||| ||||       ||||||  |||||||||    
T  41436024 caaaataactgagtcatttcacttttcaatacaatattaattactttttcccttttataactctaattaatactactttc---atcattctcaattcaat 41436120  T
Q  151 atattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    ||||||||||||  ||||||||||||| ||||||||  |  ||| ||||||| | || |||||| || |||||| ||| ||||||||||||||||    
T  41436121 atattccactttgcatttatgatagtgaagaatacatca--atacttaacaaaaacacttaaaatta-ttttctctctaattcatttatacattt 41436212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 248
Target Start/End: Original strand, 3100333 - 3100537
Alignment:
Q  39 aaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatcat 138  Q
    ||||| ||||| |||||||| |||| ||||||| |||||||||||  |||||||||       ||||| |||||||||||||| ||||       |  |     
T  3100333 aaaaaagtgtctcaaaataactgagtcatttcacttttcaatacaatattaattacttttttccctttgtaactctaattaatactactttc---acaac 3100429  T
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||| |||||||||||||||  ||||||||||||||||||| ||  |  ||| ||||||| | || ||||||  |||||||| |||| ||||||||    
T  3100430 ttccaatttaatatattccactttgcatttatgatagtggagaatgcagca--atacttaacaagatcacttaaaatcatttttctctctccttcattta 3100527  T
Q  239 tacatttgtt 248  Q
    || |||||||    
T  3100528 tatatttgtt 3100537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 5212032 - 5211928
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    |||||||||||||||||||||  |||||||||||| || ||| ||| ||||   ||||||| |||| |||||||||||||||  |||  |||||||||||    
T  5212032 caattcaatatattccactttgcatttatgatagttgataatgcacaaatac--ttaacaagagcacttaaaactatttttccctcttcttcatttatac 5211935  T
Q  242 atttgtt 248  Q
    |||||||    
T  5211934 atttgtt 5211928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 37248067 - 37247855
Alignment:
Q  31 ttttcaataaaaat-gtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnn 129  Q
    |||||||||||||  || |||||||||||||||| | ||||| ||||||||||||  |||||||        ||||||||||||||||||||  |||       
T  37248067 ttttcaataaaaaaagtatcccaaaataagtgagtcgtttcacttttcaatacatatttaattaattttttccctttataactctaattaatattacttt 37247968  T
Q  130 nnnnatcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctc 229  Q
        ||||    |||||||||||||| ||||||  |||||||||||||||||||| || |  ||| ||||||| |||| |||||||||||||| | | ||    
T  37247967 c---atcacactcaattcaatatatttcactttgcatttatgatagtggagaatagacca--atacttaacaagagcacttaaaactatttttttctttc 37247873  T
Q  230 attcatttatacatttgt 247  Q
     ||| |||||||||||||    
T  37247872 cttcttttatacatttgt 37247855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 13375264 - 13375161
Alignment:
Q  142 caattcaatatattc-cactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttata 240  Q
    ||||||||||||||  ||||||| ||||||||||||||||||| ||| ||||  || |||||| ||| |||||| ||||| ||| |||| ||||||||||    
T  13375264 caattcaatatattttcactttacatttatgatagtggagaatgcaccaatacctt-aacaactgcacttaaaattatttatctctctccttcatttata 13375166  T
Q  241 cattt 245  Q
    |||||    
T  13375165 cattt 13375161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 11726795 - 11726695
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttataca 242  Q
    |||||||||||||| |||||  | ||||||||||||||||| || ||||| |  |||||| || | |||||||||||||||| |||| ||||| ||||||    
T  11726795 aattcaatatattctactttgcaattatgatagtggagaatgcattaataca--taacaatagtacttaaaactatttttctctctccttcatctataca 11726698  T
Q  243 ttt 245  Q
    |||    
T  11726697 ttt 11726695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 28526994 - 28527098
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    ||||||||||||||| ||||||||| || |||| ||||| ||||| ||| |  ||| ||||||| |||| ||||||| |||||| | |||| ||||||||    
T  28526994 ttccaattcaatatagtccactttacatatatggtagtgaagaatgcacga--atacttaacaagagcacttaaaaccatttttttttctccttcattta 28527091  T
Q  239 tacattt 245  Q
    |||||||    
T  28527092 tacattt 28527098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 7650057 - 7650008
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaat 183  Q
    ||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  7650057 atcattttcaattcaatatattccactttgcatttatgatagtggagaat 7650008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 44534560 - 44534454
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    ||||||||||||||||||||||||  |||||||||||||||||||  || |  ||| ||||||| | || ||||||  |||||| | | || ||||||||    
T  44534560 ttccaattcaatatattccactttgcatttatgatagtggagaatgtacca--atacttaacaagaacatttaaaatcatttttttctgtccttcattta 44534463  T
Q  239 tacatttgt 247  Q
    |||||||||    
T  44534462 tacatttgt 44534454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 18181288 - 18181189
Alignment:
Q  141 ccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttata 240  Q
    ||||||||| |||||| |||||  ||||||||||||||||||| ||| |||| |  |||||| |||| ||||||| |||||||| ||||  ||| |||||    
T  18181288 ccaattcaaaatattctactttgcatttatgatagtggagaatgcaccaataca--taacaaaagcacttaaaaccatttttctctctctctcacttata 18181191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 28572238 - 28572343
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    ||||||||||||||||| || |||  ||||||||||||||||||| ||| |  ||| ||||||| |||| |||||| |  |||||| |||| || |||||    
T  28572238 ttccaattcaatatatttcattttgcatttatgatagtggagaatgcacca--atacttaacaagagcacttaaaa-tcattttctctctcctttattta 28572334  T
Q  239 tacatttgt 247  Q
    |||||||||    
T  28572335 tacatttgt 28572343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 36103374 - 36103334
Alignment:
Q  143 aattcaatatattccactttatatttatgatagtggagaat 183  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  36103374 aattcaatatattccattttatattcatgatagtggagaat 36103334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 43950522 - 43950421
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||||||||| |||||  ||||||| || |||| ||||||  ||||   ||||||| | || |||||||||||||||| |||| |||| ||||||    
T  43950522 caattcaatatattctactttgcatttatgttaatggaaaatacatcaatac--ttaacaaaaacatttaaaactatttttctctctctttcacttatac 43950425  T
Q  242 attt 245  Q
    ||||    
T  43950424 attt 43950421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 28572145 - 28572199
Alignment:
Q  40 aaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattac 94  Q
    |||| |||||||||||||| |||| ||||||| |||||||||||  |||||||||    
T  28572145 aaaaagtgtcccaaaataactgagtcatttcacttttcaatacaatattaattac 28572199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 1908571 - 1908518
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    |||||||||||||||||| |||||| ||||||||||  | ||||| ||||||||    
T  1908571 ttccaattcaatatattctactttacatttatgataaagaagaatgcactaata 1908518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 39095664 - 39095705
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaat 183  Q
    |||||||||||||||||||||  |||||||||| ||||||||    
T  39095664 caattcaatatattccactttgcatttatgataatggagaat 39095705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 40965099 - 40965148
Alignment:
Q  196 ttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||  ||| |||||||||||||||| |||| |||||||||||||||    
T  40965099 ttaacaaatgcacttaaaactatttttctctctccttcatttatacattt 40965148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 33602292 - 33602199
Alignment:
Q  150 tatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatacattt 245  Q
    |||||||||||||  ||||||||| ||| ||||| |||||||| |  |||||| |||| ||||||| |||||| |  ||| || ||||||||||||    
T  33602292 tatattccactttgcatttatgatggtgaagaatgcactaataca--taacaagagcacttaaaaccattttttttcctcttttatttatacattt 33602199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 229853 - 229958
Alignment:
Q  139 ttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcattta 238  Q
    |||||||||||||||| |||||||  |||||||||| |||||||| ||| |  ||| ||||||| |||| ||||||| ||||||||||||| ||||||||    
T  229853 ttccaattcaatatataccactttgcatttatgataatggagaatgcacca--atacttaacaagagcacttaaaac-atttttctatctccttcattta 229949  T
Q  239 tacatttgt 247  Q
    |||||||||    
T  229950 tacatttgt 229958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 26347 - 26406
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatat 193  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  26347 atcatttccaattcaatatattccactttacatttatgatagtggataatgcactaatat 26406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 98858 - 98959
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||||||||||||||||||||||| || ||||| ||| ||| |  ||| ||| ||| |||| ||||||  |||||||| ||||||||||||||||    
T  98858 caattcaatatattccactttatatttattatggtggataatgcacca--atacttatcaagagcacttaaaatcatttttctctctcattcatttatac 98955  T
Q  242 attt 245  Q
    ||||    
T  98956 attt 98959  T

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Target: scaffold0058 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 14481 - 14590
Alignment:
Q  134 atcatttccaattcaatatattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattc 233  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||| ||  |  ||| ||| |||  ||| |||||||||||||| | || | |||    
T  14481 atcattttcaattcaatatattccactttacatttatgacagtggagaatgcatca--atacttagcaagtgcaattaaaactatttttatctccccttc 14578  T
Q  234 atttatacattt 245  Q
    ||||||||||||    
T  14579 atttatacattt 14590  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 394710 - 394853
Alignment:
Q  37 ataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcattaattacnnnnnnncctttataactctaattaatgctacnnnnnnnatc 136  Q
    ||||||| |||| |||||||||||||| |||| || | ||||||||||||||||||||       |||||||||||||||||||| ||||       |||    
T  394710 ataaaaaagtgttccaaaataagtgagtcatt-cactcttcaatacatcattaattacttttttccctttataactctaattaatactac---tttcatc 394805  T
Q  137 atttccaattcaatatattccactttatatttatgatagtggagaata 184  Q
    | |  ||||||| ||||||||||||| |||||||||||| | ||||||    
T  394806 actctcaattcactatattccactttgtatttatgatagagaagaata 394853  T

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Target: scaffold0321 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 9617 - 9529
Alignment:
Q  151 atattccactttatatttatgatagtggagaatacactaatatatttaacaacagcagttaaaactatttttctatctcattcatttatac 241  Q
    ||||||||||||  |||||||||| ||||||||||| |||||   ||||||| |||| ||||||| |||||||| |||| |||||||||||    
T  9617 atattccactttgcatttatgataatggagaatacattaatac--ttaacaagagcacttaaaaccatttttctctctccttcatttatac 9529  T

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Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 26646 - 26688
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaata 184  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  26646 caattcaatatattccactttgcatttatgatagtggagaata 26688  T

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Target: scaffold0028; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 26534 - 26589
Alignment:
Q  31 ttttcaataaaaatgtgtcccaaaataagtgagacatttcaattttcaatacatcat 87  Q
    |||||||||||||  | ||||||||||| |||| ||||||| |||||||||||||||    
T  26534 ttttcaataaaaaa-tatcccaaaataaatgagtcatttcacttttcaatacatcat 26589  T

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Target: scaffold0221 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 8920 - 8970
Alignment:
Q  142 caattcaatatattccactttatatttatgatagtggagaatacactaata 192  Q
    |||||||||||||||||||||  |||||| |||||||||||| ||| ||||    
T  8920 caattcaatatattccactttgcatttataatagtggagaatgcaccaata 8970  T

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