View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8722_low_3 (Length: 357)
Name: NF8722_low_3
Description: NF8722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8722_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 47259073 - 47259400
Alignment:
| Q |
19 |
ctaagattatatgaggaagtacattggaacctgacagaacatgaaatgattatgaaaaatgacaaacnnnnnnncagcattaaattttttaatcaaataa |
118 |
Q |
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| T |
47259073 |
ctaagattatatgaggaagtacattggaacctgacagaacatgaaatgattatgaaaaatgacaaacaaaaaaacagcattaaattttttaatcaaataa |
47259172 |
T |
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| Q |
119 |
taaataatgcctatacaatgatatgcaagatacaaattcacagaacattccaactttcaaggaactgagagccaaagttgaaagaatctgttccactaat |
218 |
Q |
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| T |
47259173 |
taaataatgcctatacaatgatatgcaagatacaaattcacagaacattccaactttcaaggaactgagagccaaagttgaaagaatctgttccactaat |
47259272 |
T |
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| Q |
219 |
atgaaagtacactccaagtcaaaaacaataaagctgtatgctcgctctacagcgagagaaggttgaattgaagtttgatcttcagtttacgagttgaaaa |
318 |
Q |
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| T |
47259273 |
atgaaagtacactccaagtcaaaaacaataaagctgtat----gctctacagcgagagaaggttgaattgaagtttgatcttcggtttacgagttgaaaa |
47259368 |
T |
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| Q |
319 |
cgaagaacttccaccaaaatcagaataatcta |
350 |
Q |
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| T |
47259369 |
cgaagaacttccaccaaaatcagaacaatcta |
47259400 |
T |
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