View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8723_high_4 (Length: 406)
Name: NF8723_high_4
Description: NF8723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8723_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 34777292 - 34777686
Alignment:
| Q |
1 |
tcatcataaccaatctggtaaccgggaaagacaaggtccaaactttcataatcatcatgagtatcaaactaatgggccacatgttggtgacagcaaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777292 |
tcatcataaccaatctggtaaccgggaaagacaaggtccaaactttcataatcatcatgagtatcaaactaatgggccacatgttggtgacagcaaatca |
34777391 |
T |
|
| Q |
101 |
gactactctgaacggcctgaagatggtaattatcaggctgggggaagatttagggagagaagtcaaactcactcaagacgaggtggtggaaacttctctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777392 |
gactactctgaacggcctgaagatggtaattatcaggctgggggaagatttagggagagaagtcaaactcactcaagacgaggtggtggaaacttctctc |
34777491 |
T |
|
| Q |
201 |
gccgctagttagagtggtggttttgattagaagctgttaatgagtagcggttctacttcaagatggtttttgtgctccatcagaagcccatatgtattgg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777492 |
gccgctagttagagtggtggttttgattagaagctgttaatgagtagtggttctacttcaagatggtttttgtgctccatcagaagcccatatgtattgg |
34777591 |
T |
|
| Q |
301 |
tgctttgttcagtcttattggggtatatgtagtgcaggttttggatgatttgagttttgaatggtaattgcagttgcatcagttatgttctgatg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777592 |
tgctttgttcagtcttattggggtatatttagtgcaggttttggatgatttgagttttgaatggtaattgcagttgcatcagttatgttctgatg |
34777686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 85 - 285
Target Start/End: Original strand, 34790802 - 34791009
Alignment:
| Q |
85 |
tggtgacagcaaatcagactactctgaacggcctgaagatggtaattatcaggctgggggaagatttagggagagaagtcaaactcactcaagacgaggt |
184 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
34790802 |
tggtgacagcaaatcagacaactctgaacgacctaaagatggtaactatcatgctgggggaagatttagggagaggggtcaaacgcactcaagacgaggt |
34790901 |
T |
|
| Q |
185 |
ggtggaaacttctctcgccgctagttag-------agtggtggttttgattagaagctgttaatgagtagcggttctacttcaagatggtttttgtgctc |
277 |
Q |
| |
|
||||||||||||||||| | |||| ||| ||||||||||| |||||||||||||||||| |||| |||| || | | | ||||||| | ||||| |
|
|
| T |
34790902 |
ggtggaaacttctctcggcactagctagtagctatagtggtggtttcgattagaagctgttaatgggtagtggttatattcctacatggtttatatgctc |
34791001 |
T |
|
| Q |
278 |
catcagaa |
285 |
Q |
| |
|
|| ||||| |
|
|
| T |
34791002 |
caccagaa |
34791009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University