View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8723_high_5 (Length: 381)
Name: NF8723_high_5
Description: NF8723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8723_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 46962535 - 46962210
Alignment:
| Q |
11 |
cagagacccttaacagtgaagcaagtgcaatttcttgagcctttaaaactaagaccctgatactggtttttgggttccaccattcgattttggatatatt |
110 |
Q |
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| T |
46962535 |
cagagacccttaactgtgaagcaagtgcaatttcttgagcctttaaaactaagaccctgatactggtttttgggttccaccattcgattttggatatatt |
46962436 |
T |
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| Q |
111 |
tccacctctgatgtggtagtgattcctccatggtaaatgatgcatcattttcacacatcttaaaaatccaaccatacggtttctccacgtgattgaaagt |
210 |
Q |
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| T |
46962435 |
tccacctctgatgtggtagtgattcctccatggtaaatgatgcatcattttcacacatcttaaaaatccaaccatacggtttctccatgtgattgaaagt |
46962336 |
T |
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| Q |
211 |
gccccgtcggggatatggaacagcgaaacctggcacattcggatgcttgttttctaccgggtagtatttaccttcagggacctgcagcctatacctcctc |
310 |
Q |
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| T |
46962335 |
gccccgtcggggatatggaacagcgaaacctggcacattcggatgcttgttttctaccgggtagtatttaccttcaggtacctgcagcctata---cctc |
46962239 |
T |
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| Q |
311 |
ctagtgattgctgaattagaaactggtaa |
339 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
46962238 |
atagtaattgctgaattagaaactggtaa |
46962210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 365
Target Start/End: Complemental strand, 46962182 - 46962154
Alignment:
| Q |
337 |
taaaatataacaaaagttgaggtcaaatg |
365 |
Q |
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| T |
46962182 |
taaaatataacaaaagttgaggtcaaatg |
46962154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 25185014 - 25184825
Alignment:
| Q |
6 |
agtagcagagacccttaacagtgaagcaagtgcaatttcttgagcctttaaaactaagaccctgatactggtttttgggttccaccattcgattttggat |
105 |
Q |
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|||| ||||||||||||| |||| || ||||||||||||| ||| | |||||||||||||||||||||||||| |||| || |||||||| | |||| |
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| T |
25185014 |
agtaacagagacccttaattgtgatgcgagtgcaatttcttcagcatc-aaaactaagaccctgatactggtttt-gggtctcaacattcgatgtcggat |
25184917 |
T |
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| Q |
106 |
atatttccacctctgatgt-ggtagtgattcctccatggtaaatgatgcatcattttcacacatcttaaaaatccaaccatacggtttctcc |
196 |
Q |
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| T |
25184916 |
ctacttccacctctattggaggcagtgattcatccattgtcaatgatgcatccttttcatacatcttaaaaatccaatcatctggtttctcc |
25184825 |
T |
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