View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8723_low_1 (Length: 533)
Name: NF8723_low_1
Description: NF8723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8723_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 519
Target Start/End: Original strand, 32794164 - 32794666
Alignment:
| Q |
17 |
aaatatatttcaatcttgtgatttgaannnnnnnnattttggaccttcatagcatatgattgtgtaaataagatgttttagcgtaatgagccagattttg |
116 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||||| |||||| |||||| |
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| T |
32794164 |
aaatatatttcaatcttgtgatttgaattttttttattttggactttcatagcatatgattgtgtaagtgtgatgttttagcgtattgagccgaattttg |
32794263 |
T |
|
| Q |
117 |
tctttctttttcgtatattttaattccacctagatattttctagttccaattcaactgtgtaaatgtgactctaccaaaaaattattaaattttgtaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
32794264 |
tctttctttttcgtatattttaattccacctagatattttctagttacaattcaactgtgtaaatgtgactctactaaaaaattactaaattttgtaaca |
32794363 |
T |
|
| Q |
217 |
ttatccaacttagaaaagggaaaagaacaagttcatcatcatgttttaattttacctagggatagcacatgtacaaacaaccaactaagttaagttacaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32794364 |
ttatccaacttagaaaagggaaaagaacaagttcatcatcatgttgtagttttacctagggatagcacatgtacaaacaaccaactaagttaagttacaa |
32794463 |
T |
|
| Q |
317 |
agcacataggacccatgtgggaccagcttttgccacgtgaactgatgaagtcatatatccacgtggcaggggcaggattacttgtgacttatctcatgct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32794464 |
agcacataggacccatgtgggaccagcttttgccacgtgaactgatgaagtcatatatccacgtggcacgggcaggattacttgtgacttatctcatgct |
32794563 |
T |
|
| Q |
417 |
ttttccattgatgccaaattctctcactctcatgctttccctttcatgaatccatcttttggtgcttttctcctttatgagtttatgcttccttttgctt |
516 |
Q |
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| T |
32794564 |
ttttccattgatgccaaattctctcactctcatgctttccctttcatgaatccatcttttggtgcttttctcctttatgagtttatgcttccttttgctt |
32794663 |
T |
|
| Q |
517 |
ttc |
519 |
Q |
| |
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||| |
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| T |
32794664 |
ttc |
32794666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 492
Target Start/End: Complemental strand, 29097880 - 29097835
Alignment:
| Q |
447 |
catgctttccctttcatgaatccatcttttggtgcttttctccttt |
492 |
Q |
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| T |
29097880 |
catgctttccctttcatcaatccatctttttgtgcttttctccttt |
29097835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 29098004 - 29097972
Alignment:
| Q |
325 |
ggacccatgtgggaccagcttttgccacgtgaa |
357 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29098004 |
ggacccatgtgggaccagcttttgccacgtgaa |
29097972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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