View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8723_low_10 (Length: 323)
Name: NF8723_low_10
Description: NF8723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8723_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 29183888 - 29184121
Alignment:
| Q |
1 |
aatgataatttaagatcgcctagtcttaaaattggtcgataagtcgtttttgttgttgttaggaatggtccatatgaagtacatgatataagttttatac |
100 |
Q |
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| T |
29183888 |
aatgataattcaagatcgcctagtcttaaaattggtcgataagtcgtttttgttgttgttaggaatggtcaatatgaagtacatgacataagttttatac |
29183987 |
T |
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| Q |
101 |
cgtatgtttggcattatattttgttcgttaaaattatggtgaaccatcgtgatgttacaaaa-ttataacttgtaatttttgaaaaattatattaattcg |
199 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| |||| |
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| T |
29183988 |
cgtatgttcggcattatattgtgttcgttaaaattatggtgaaccatcctgatgttacaaaagttataac--ataatttttgaaaaattatattgattca |
29184085 |
T |
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| Q |
200 |
acgtgattctatctaactcaatatgaatttaaacat |
235 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
29184086 |
acgtgattctatctaattcaatatgaatttaaacat |
29184121 |
T |
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