View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8723_low_12 (Length: 288)
Name: NF8723_low_12
Description: NF8723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8723_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 25035262 - 25035526
Alignment:
| Q |
18 |
aatcacacattattgaggaagaagatcaaatattataattcaagatttacatatacaataatgtatgactaatgttattttgaaaattcacactcctagt |
117 |
Q |
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| T |
25035262 |
aatcacacattattgattaagaagatcaaatattata-ttcaagatttacatatacaataatatatgactaatgttattttgaaaattcacactcctagt |
25035360 |
T |
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| Q |
118 |
tagtatatcttttactaacnnnnnnnnnnnnnnnnntcaatccaacaattgcaagtttttgagagaggctttgatcaatttcttactctaattgccgatg |
217 |
Q |
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| T |
25035361 |
tagtatatcttttactaccaaaaaaaaaaaaaaa--taggtccaacaattgcaagtttttgagagaggctttgatgaatttcttactctaattgccgatg |
25035458 |
T |
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| Q |
218 |
accattcctacttcactcctctctaccatcaacaacaacaacaaaaaatgctatataatttatgtgtgtga |
288 |
Q |
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| T |
25035459 |
accattcctacttcactcctctctac---caccaacaacaacaaaaaatactatataatttatgtgtgtga |
25035526 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 868768 - 868840
Alignment:
| Q |
165 |
attgcaagtttttgagagaggctttgatcaatttcttactctaattgccgatgaccattcctacttcactcct |
237 |
Q |
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| T |
868768 |
attgcaagtttttgagtgaggctttgaagagtttctcactctcatcgccgatgatcattcctactgcactcct |
868840 |
T |
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