View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8723_low_15 (Length: 242)
Name: NF8723_low_15
Description: NF8723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8723_low_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 33966873 - 33966649
Alignment:
| Q |
18 |
gaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaatcct |
117 |
Q |
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| T |
33966873 |
gaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaatcct |
33966774 |
T |
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| Q |
118 |
tcttttggagattttgatacaattcaagatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcatgcaggagtttacacgt |
217 |
Q |
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| T |
33966773 |
tcttttggagattttgatacaattcaaaatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcatgcaggagtttacacgt |
33966674 |
T |
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| Q |
218 |
gagtagtactatactttatctcatt |
242 |
Q |
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| T |
33966673 |
gagtagtactatactttatctcatt |
33966649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 43076705 - 43076909
Alignment:
| Q |
18 |
gaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaatcct |
117 |
Q |
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||||||||||| |||||||||||||||||||| ||||| | | | || ||||||||||| ||| |||||||||||||| ||||| |||| || | |
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| T |
43076705 |
gaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaacgtttataaacattca |
43076804 |
T |
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| Q |
118 |
tcttttggag-attttgatacaattcaagatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcatgcaggagtttacacg |
216 |
Q |
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| T |
43076805 |
agtaaaggaggattttcat-caattcaagcagccattgattcccttcccttcattaatttagtgagagttgtcattaaggttcatgcaggggtttacacg |
43076903 |
T |
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| Q |
217 |
tgagta |
222 |
Q |
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| T |
43076904 |
taagta |
43076909 |
T |
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