View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8723_low_3 (Length: 426)
Name: NF8723_low_3
Description: NF8723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8723_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 35318628 - 35318224
Alignment:
| Q |
9 |
aagcagagagaagaaagtgagtggtttagttatcctgatttggtaaatgaaagggagttagacataaatggacccttttcttctttaagaccaaatgagg |
108 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35318628 |
aagcaaagagaagaaagtaagtggtttagttatcctcatttggtaaatgaaagggagttagacataaatggacccttttcttctttaagaccaaatgagg |
35318529 |
T |
|
| Q |
109 |
aaagtgaatgtatttgggaaagaaagatttcgtgcactagctgactgtgttagaagacaagactagattgatttatgatctaaatttagaaactcattct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35318528 |
aaagtgaatgtatttgggaaagaaagatttcgtgcactagctgactgtgttagaagacaagactagattgatttatgatctaaatttagaaactcattct |
35318429 |
T |
|
| Q |
209 |
agtgggtgaaagaacaccaaatcgagaaaactgtcatttctcttttcctctaatttccttccagtacatcacacatgacatgaaatatttcaaaagtaca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35318428 |
agtgggtgaaagaacaccaaatcgagaaaactgtcatgtctcttttcctctaatttccttccagtacatcacacatgacatgaaatatttcaaaagtaca |
35318329 |
T |
|
| Q |
309 |
tcacaaattaacaaaaatataaaatcaaaggaattaattaatgtgacggtgagattaatgaatatgtttatctgtctttacggtgagaattgaagtaaca |
408 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35318328 |
tcacaaattaacaaaaaaataaaatcaaaggaattaattaatgtgacggtgagattaatgaatatgtttatctgtctttacggtgagaattgaagtaaca |
35318229 |
T |
|
| Q |
409 |
attga |
413 |
Q |
| |
|
||||| |
|
|
| T |
35318228 |
attga |
35318224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University