View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8723_low_8 (Length: 331)
Name: NF8723_low_8
Description: NF8723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8723_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 31 - 309
Target Start/End: Complemental strand, 26547953 - 26547675
Alignment:
| Q |
31 |
agacccatatattgttagcagtgagggcaatgacagggtatgcatataaagttaattgagacccctaaactgaaagagaagcctaataactctagacaaa |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26547953 |
agacccatatattgttagcagtgagggcaatgacagggtatacatataaaattaattgagacccctaaactgaaagagaagcctaataactctagacaaa |
26547854 |
T |
|
| Q |
131 |
ttggcagcataatctacggtgtacaaaattaactagtaaaaactcgtaaaaacagttaactacttataccttcagctcaatgacgatgggtgttctttct |
230 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26547853 |
tcggcagcataatctacggtgtacaaaattaactagtaaaaactcgcaaaaacagttaactatttataccttcagctcaatgacgatgggtgctctttct |
26547754 |
T |
|
| Q |
231 |
cttttttgaaaggatctggtcagtttccttgtaaaatacgatttgctgaatattctcttttgctccaaaatcaattacc |
309 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26547753 |
cttttttgaaaggatctggtcggtttccttgtaaaatacgatttgctgaatattctcttttgctccaaaatcaattacc |
26547675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 26541237 - 26541038
Alignment:
| Q |
31 |
agacccatatattgttagcagtgagggcaatgacagggtatgcatataaagttaattgagacccctaaactgaaagagaagcctaataactctagacaaa |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
26541237 |
agacccatatattgttagcagtgagggcaatgacagggtatacatatgaagttaattgagacccctaaactcaaagagaagcctaataactccagacaaa |
26541138 |
T |
|
| Q |
131 |
ttggcagcataatctacggtgtacaaaattaactagtaaaaactcgtaaaaacagttaactacttataccttcagctcaatgacgatgggtgttctttct |
230 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26541137 |
ttggcagcataaactatggtgcacaaaattaactagtaaaaactcgcaaaaacagttaaccatttataccttcagctcaatgacgaccggtgttctttct |
26541038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 26541034 - 26540979
Alignment:
| Q |
258 |
cttgtaaaatacgatttgctgaatattctcttttgctccaaaatcaattaccttct |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
26541034 |
cttgtaaaatacgatttgctgaatattcttttttgctccaaaatcaatttccttct |
26540979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University