View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8723_low_9 (Length: 328)

Name: NF8723_low_9
Description: NF8723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8723_low_9
NF8723_low_9
[»] chr4 (5 HSPs)
chr4 (59-270)||(34527287-34527498)
chr4 (11-51)||(25650760-25650800)
chr4 (11-58)||(16853928-16853975)
chr4 (11-58)||(29121823-29121870)
chr4 (11-58)||(55732243-55732290)
[»] chr6 (6 HSPs)
chr6 (11-59)||(21618693-21618741)
chr6 (11-58)||(7618057-7618104)
chr6 (11-58)||(15955143-15955190)
chr6 (11-58)||(17381886-17381933)
chr6 (11-49)||(19832656-19832694)
chr6 (11-59)||(16877671-16877719)
[»] chr7 (6 HSPs)
chr7 (11-59)||(2265189-2265237)
chr7 (11-59)||(12173982-12174030)
chr7 (11-59)||(15700948-15700996)
chr7 (11-58)||(23390688-23390735)
chr7 (11-49)||(35952338-35952376)
chr7 (11-59)||(16111540-16111588)
[»] chr2 (6 HSPs)
chr2 (11-58)||(28700815-28700862)
chr2 (11-59)||(28711315-28711363)
chr2 (11-59)||(35743689-35743737)
chr2 (11-58)||(31800485-31800532)
chr2 (11-59)||(34321504-34321552)
chr2 (11-59)||(38781830-38781878)
[»] chr3 (9 HSPs)
chr3 (11-49)||(2785549-2785587)
chr3 (11-59)||(22141199-22141247)
chr3 (11-59)||(24775155-24775203)
chr3 (11-46)||(5216444-5216479)
chr3 (11-58)||(14955913-14955960)
chr3 (11-58)||(33583717-33583764)
chr3 (11-58)||(33591206-33591253)
chr3 (11-58)||(33598337-33598384)
chr3 (11-49)||(53056394-53056432)
[»] chr8 (7 HSPs)
chr8 (11-60)||(24832708-24832757)
chr8 (11-59)||(15335697-15335745)
chr8 (11-59)||(15424762-15424810)
chr8 (11-59)||(15516066-15516114)
chr8 (11-59)||(24551745-24551793)
chr8 (11-58)||(36105676-36105723)
chr8 (11-49)||(45538120-45538158)
[»] chr5 (3 HSPs)
chr5 (11-59)||(5430313-5430361)
chr5 (11-58)||(4887458-4887505)
chr5 (11-59)||(15517424-15517472)
[»] scaffold0471 (1 HSPs)
scaffold0471 (11-58)||(3793-3840)
[»] scaffold0439 (1 HSPs)
scaffold0439 (11-62)||(6312-6363)
[»] scaffold0015 (1 HSPs)
scaffold0015 (11-58)||(61262-61309)
[»] chr1 (1 HSPs)
chr1 (11-58)||(25448111-25448158)
[»] scaffold0488 (1 HSPs)
scaffold0488 (11-49)||(11221-11259)
[»] scaffold0028 (1 HSPs)
scaffold0028 (11-59)||(5217-5265)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 59 - 270
Target Start/End: Complemental strand, 34527498 - 34527287
Alignment:
Q  59 acttcccaagatcctctgcagactacattcccaaagttgaactaatatgttgctttgcatgccaacccacgttcttagagaagaacactctagaattttt 158  Q
    |||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  34527498 acttcccaaggtcctctgcagaatgaattcccaaagttgaactaatatgttgctttgcatgccaacccacattcttaaagaagaaaactctagaattttt 34527399  T
Q  159 gctactaactctttgccctgaactcccacaaaaaatatgcaagatagagatagattagatcacatgagcttggtct------atactggtatacttgcaa 252  Q
    ||||||||||||||| ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||      ||||||||||||||||||    
T  34527398 gctactaactctttgtcctgaactcccacaaaaaatatgcaaga------tagattagatcacatgagcttggtctatactaatactggtatacttgcaa 34527305  T
Q  253 ccagaatagaataatatc 270  Q
    ||||||||||||||||||    
T  34527304 ccagaatagaataatatc 34527287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 25650800 - 25650760
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttat 51  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  25650800 atcatcaaaactcttaagggttaacgttaaacacattttat 25650760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 16853928 - 16853975
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||||    
T  16853928 atcatcaaaactcttaagggttaacattaaacacattttgttccaaca 16853975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 29121823 - 29121870
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  29121823 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 29121870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 55732243 - 55732290
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  55732243 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 55732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 21618693 - 21618741
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||    
T  21618693 atcatcaaaactcttaagggttaacgttaaacacattttattccaacaa 21618741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 7618104 - 7618057
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  7618104 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 7618057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 15955143 - 15955190
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  15955143 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 15955190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 17381886 - 17381933
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  17381886 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 17381933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 19832694 - 19832656
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacatttt 49  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  19832694 atcatcaaaactcttaagggttaacgttaaacatatttt 19832656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 16877671 - 16877719
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||| | ||||||||||| |||||||||||||| ||| |||||    
T  16877671 atcatcaaaattcttaagggttaatgttaaacacattttgttccaacaa 16877719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 2265237 - 2265189
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  2265237 atcatcaaaacttttaagggttatcgttaaacacattttgttccaacaa 2265189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 12174030 - 12173982
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| |||||||||||||||||||||||||| ||| |||||    
T  12174030 atcatcaaaactcttaagggttaacgttaaacacattttgttccaacaa 12173982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 15700996 - 15700948
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| |||||||||||||||||||||||||| ||| |||||    
T  15700996 atcatcaaaactcttaagggttaacgttaaacacattttgttccaacaa 15700948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 23390735 - 23390688
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  23390735 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 23390688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 35952376 - 35952338
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacatttt 49  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  35952376 atcatcaaaactcttaagggttaatgttaaacacatttt 35952338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 16111588 - 16111540
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||| | ||||||||||| |||||||||||||| ||| |||||    
T  16111588 atcatcaaaattcttaagggttaatgttaaacacattttgttccaacaa 16111540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 28700862 - 28700815
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  28700862 atcatcaaaactcttaagggttaatgttaaacacattttattccaaca 28700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 28711363 - 28711315
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| |||||    
T  28711363 atcatcaaaactcttaagggttaatgttaaacacattttgttccaacaa 28711315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 35743737 - 35743689
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| |||| |||||||||||||| |||||| |||||||||    
T  35743737 atcatcaaaactcttaaaggttaacgttaaacgcattttgttctaacaa 35743689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 31800532 - 31800485
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  31800532 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 31800485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 34321552 - 34321504
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| ||||||||||  |||||||||||||| ||| |||||    
T  34321552 atcatcaaaactcttaagggttattgttaaacacattttgttccaacaa 34321504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 38781830 - 38781878
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    ||||||||||||||||| || ||| |||||||||||||| ||| |||||    
T  38781830 atcatcaaaacttttaaaggataatgttaaacacattttgttccaacaa 38781878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 2785549 - 2785587
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacatttt 49  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  2785549 atcatcaaaactcttaagggttaacgttaaacacatttt 2785587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 22141199 - 22141247
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| |||||    
T  22141199 atcatcaaaactcttaagggttaatgttaaacacattttgttccaacaa 22141247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 24775203 - 24775155
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| |||||    
T  24775203 atcatcaaaactcttaagggttaatgttaaacacattttgttccaacaa 24775155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 5216444 - 5216479
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacat 46  Q
    |||||||||||| |||||||||||||||||||||||    
T  5216444 atcatcaaaactcttaagggttaacgttaaacacat 5216479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 14955913 - 14955960
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    ||||| |||||||||||||||||| |||||||||||||| ||| ||||    
T  14955913 atcattaaaacttttaagggttaatgttaaacacattttgttccaaca 14955960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 33583717 - 33583764
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  33583717 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 33583764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 33591206 - 33591253
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  33591206 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 33591253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 33598337 - 33598384
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  33598337 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 33598384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 53056432 - 53056394
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacatttt 49  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  53056432 atcatcaaaactcttaagggttaatgttaaacacatttt 53056394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 24832757 - 24832708
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaac 60  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||||    
T  24832757 atcatcaaaactcttaagggttaatgttaaacacattttgttccaacaac 24832708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 15335745 - 15335697
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| |||||    
T  15335745 atcatcaaaactcttaagggttaatgttaaacacattttgttccaacaa 15335697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 15424810 - 15424762
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| |||||    
T  15424810 atcatcaaaactcttaagggttaatgttaaacacattttgttccaacaa 15424762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 15516114 - 15516066
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| |||||    
T  15516114 atcatcaaaactcttaagggttaatgttaaacacattttgttccaacaa 15516066  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 24551745 - 24551793
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| |||||    
T  24551745 atcatcaaaactcttaagggttaatgttaaacacattttgttccaacaa 24551793  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 36105676 - 36105723
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    ||||||||||||  ||||| ||||||||||||||||||||||| ||||    
T  36105676 atcatcaaaactcctaaggattaacgttaaacacattttattccaaca 36105723  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 45538158 - 45538120
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacatttt 49  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  45538158 atcatcaaaactcttaagggttaatgttaaacacatttt 45538120  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 5430313 - 5430361
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| |||||    
T  5430313 atcatcaaaactcttaagggttaatgttaaacacattttgttccaacaa 5430361  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 4887458 - 4887505
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  4887458 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 4887505  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 15517424 - 15517472
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| |||||||||||| |||| |||||||| ||| |||||    
T  15517424 atcatcaaaactcttaagggttaacattaagcacattttgttccaacaa 15517472  T

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Target: scaffold0471 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 3793 - 3840
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    ||||||||||||  ||||| ||||||||||||||||||||||| ||||    
T  3793 atcatcaaaactcctaaggattaacgttaaacacattttattccaaca 3840  T

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Target: scaffold0439 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 6363 - 6312
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaactt 62  Q
    |||||||||||| ||||||||||| ||| |||||||||| ||| ||||||||    
T  6363 atcatcaaaactcttaagggttaatgttcaacacattttgttccaacaactt 6312  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 61262 - 61309
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| |||||| |||  |||||||||||||||||||||||    
T  61262 atcatcaaaactcttaaggattattgttaaacacattttattctaaca 61309  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 25448158 - 25448111
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaaca 58  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  25448158 atcatcaaaactcttaagggttaatgttaaacacattttgttccaaca 25448111  T

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Target: scaffold0488 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 11259 - 11221
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacatttt 49  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  11259 atcatcaaaactcttaagggttaatgttaaacacatttt 11221  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 5265 - 5217
Alignment:
Q  11 atcatcaaaacttttaagggttaacgttaaacacattttattctaacaa 59  Q
    |||||||||||| ||||||||||| | |||||||||||| ||| |||||    
T  5265 atcatcaaaactcttaagggttaatgataaacacattttgttccaacaa 5217  T

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