View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8724_high_1 (Length: 632)
Name: NF8724_high_1
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8724_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 12 - 614
Target Start/End: Original strand, 38811808 - 38812418
Alignment:
| Q |
12 |
taatactagtaaggaagctgcaaagcaagggcttatgatcatg--------gaaatgagaggttctttggccattctcaactttccacatgaacattttc |
103 |
Q |
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| T |
38811808 |
taatactagtaaggaagctgcaaaacaagggcttatgatcatgctgcttttgaaatgagaggttctttggccattctcaactttccacatgaacattttc |
38811907 |
T |
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| Q |
104 |
cttgcaatgtggtttataattcttctaagtcatcttcttcatccaattcaacgccatcattatcatcggcatcaccaccaccatcatggattaaatcaga |
203 |
Q |
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| T |
38811908 |
cttgcaatgtggtttataattcttctaagtcatcttcttcatccaattcaacgccatcattatcatcggcatcaccaccaccatcatggattaaatcaga |
38812007 |
T |
|
| Q |
204 |
gcttggtgaacaagttctagattttgagtattgggatgaaacattgttagaggaactcttggattttgagagcatcctcaaccaaaacttgttcaaggag |
303 |
Q |
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| T |
38812008 |
gcttggtgaacaagttctagattttgagtattgggatgaaacattgttagaggaactcttggattttgagagcatcctcaaccaaaacttgttcaaggag |
38812107 |
T |
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| Q |
304 |
gagttacttgatttaagcatgagtgatcttgttctgtttttaccccgaaatatatgtttagtacttaatgtcaattaagtactttataagagagttgttt |
403 |
Q |
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| T |
38812108 |
gagttacttgatttaagcatgagtgatcttgttctgtttttaccccgaaatatatgtttagtacttaatgccaattaagtactttataagagaggagttt |
38812207 |
T |
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| Q |
404 |
gttgatacacaatgtttattccaatttgataaataagctaaaacctactccttcggtccctttttataaggatccattctgcgggtgaaaatgatgctta |
503 |
Q |
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| T |
38812208 |
gttgatacacaatgtttattccaatttgataaataagctaaaacctactccttcggtccctttttataaggatccattctgcgggtgaaaatgatgctta |
38812307 |
T |
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| Q |
504 |
tataaatataagacggagggtgtaaaatataatgagaaccaagttttgttgtgacaagtgcaattcatgtaatgccagcatggttttaaactgctctcag |
603 |
Q |
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| T |
38812308 |
tataaatataagacggagggtgtaaaatataatgagaaccaagttttgttgtgacaagtgcaattcatgtaatgccagcatggttttaaactgctctcag |
38812407 |
T |
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| Q |
604 |
taacagtaagt |
614 |
Q |
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| T |
38812408 |
taacagtaagt |
38812418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 55 - 345
Target Start/End: Original strand, 38809786 - 38810064
Alignment:
| Q |
55 |
gaaatgagaggttctttggccattctcaactttccacatgaacatt---ttccttgcaatgtggtttataattcttctaagtcatcttcttcatccaatt |
151 |
Q |
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| T |
38809786 |
gaaatgagaggttcttcagctattcttaactttcctcatgaacattattttccttgcagtgtggtatataacccttctaagccgtcttcttcctccaatt |
38809885 |
T |
|
| Q |
152 |
caacgccatcattatcatcggcatcaccaccaccatcatggattaaatcagagcttggtgaacaagttctagattttgagtattgggatgaaacattgtt |
251 |
Q |
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| T |
38809886 |
caacctcatcatcatcatct---------------tcaaaggttaaatcggaacttgttgaacaagttatagagtttgagtatttggatgaaaaattatt |
38809970 |
T |
|
| Q |
252 |
agaggaactcttggattttgagagcatcctcaaccaaaacttgttcaaggaggagttacttgatttaagcatgagtgatcttgttctgttttta |
345 |
Q |
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| T |
38809971 |
agaggaactcttggattttgagagcatcatcaaccaggacttgttcaagtaggagttacttgatttaagcatgagtgattttgttctgttttta |
38810064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 38822847 - 38822967
Alignment:
| Q |
194 |
ttaaatcagagcttggtgaacaagttctagattttgagtattgggatgaaacattgttagaggaactcttggattttgagagcatcctcaaccaaaactt |
293 |
Q |
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| T |
38822847 |
ttaaatcggagcttggtgaacaaattatagagtttgagtatttggatgaaaaattattagaggaactcttggatcctgagaataccatcaataacaactg |
38822946 |
T |
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| Q |
294 |
gttcaaggaggagttacttga |
314 |
Q |
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| T |
38822947 |
gttcaagtaggagttacttga |
38822967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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