View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8724_high_10 (Length: 250)
Name: NF8724_high_10
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8724_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 206798 - 206567
Alignment:
| Q |
1 |
tgtaaattttcggtagatctccagtttagccaagtttctccttgtctacatccaaataaacaacaaatagaaaataagaatatgcagaaatgataagcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
206798 |
tgtaaattttcggtagatctccagtttagccaagtttctccttgtctacatccaaataaacaacaaatagaaaataagaatatgcagaaatgataagcct |
206699 |
T |
|
| Q |
101 |
aactcacatatcttctacaaggtcacaaaaaggccatattccacatttataaaaaccacaaaccttactaagtaaacctgtcctacctatccccaacggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
206698 |
aactcacatatcttctacaaggtcacaaaaaggccatattccacatttataaaaaccacaaaccttaataagtaaacctgtcctacctatccccaacagg |
206599 |
T |
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| Q |
201 |
ggttggaacccatctaaatacaagattacata |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
206598 |
ggttggaacccatctaaatacaagattacata |
206567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 321635 - 321404
Alignment:
| Q |
1 |
tgtaaattttcggtagatctccagtttagccaagtttctccttgtctacatccaaataaacaacaaatagaaaataagaatatgcagaaatgataagcct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
321635 |
tgtaaattttcggtagatctccagtttagccaagtttctccttgtctacatccaaataaacaacaaatagaaaataagaatatgcagaaatgataagcct |
321536 |
T |
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| Q |
101 |
aactcacatatcttctacaaggtcacaaaaaggccatattccacatttataaaaaccacaaaccttactaagtaaacctgtcctacctatccccaacggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
321535 |
aactcacatatcttctacaaggtcacaaaaaggccatattccacatttataaaaaccacaaaccttaataagtaaacctgtcctacctatccccaacagg |
321436 |
T |
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| Q |
201 |
ggttggaacccatctaaatacaagattacata |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
321435 |
ggttggaacccatctaaatacaagattacata |
321404 |
T |
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Back To:
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