View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8724_high_12 (Length: 219)
Name: NF8724_high_12
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8724_high_12 |
 | |
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| [»] chr7 (6 HSPs) |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 14804731 - 14804513
Alignment:
| Q |
1 |
ggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14804731 |
ggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaa |
14804632 |
T |
|
| Q |
101 |
agcaaccaaaattaattccttggatttgataaagtgcttgtattccattgctcttgtgaagggggaaatataatcaagaaacagccgatgaatcgatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14804631 |
agcaaccaaaattaattccttggatttgataaagtgcttgtattccattgctcttgtgaagggggaaatataatcaagaaacagccgatgaatcgatata |
14804532 |
T |
|
| Q |
201 |
ttggtgaggatgatgtatt |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14804531 |
ttggtgaggatgatgtatt |
14804513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15251725 - 15251507
Alignment:
| Q |
1 |
ggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15251725 |
ggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaa |
15251626 |
T |
|
| Q |
101 |
agcaaccaaaattaattccttggatttgataaagtgcttgtattccattgctcttgtgaagggggaaatataatcaagaaacagccgatgaatcgatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15251625 |
agcaaccaaaattaattccttggatttgataaagtgcttgtattccattgctcttgtgaagggggaaatataatcaagaaacagccgatgaatcgatata |
15251526 |
T |
|
| Q |
201 |
ttggtgaggatgatgtatt |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15251525 |
ttggtgaggatgatgtatt |
15251507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 14812149 - 14811932
Alignment:
| Q |
3 |
aatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaaag |
102 |
Q |
| |
|
||||||| ||| || |||||||||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| | |
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|
| T |
14812149 |
aatggtcgtaagcacgagttacatgtctctacttatcaaatgtgtgtcctgatgttgtttaatgatattgatcaactaagctacaaggacattgagactg |
14812050 |
T |
|
| Q |
103 |
caaccaaaattaattccttggatttgataaagtgcttgtattccattgctcttgtgaa-gggggaaatataatcaagaaacagccgatgaatcgatatat |
201 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| || | | | ||||| || |||||||||||||||| ||| |||||| || | || |
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|
| T |
14812049 |
caaccaaaattaattctttggatttgataaagtgcttgtattcgatggttttcgtgaatggaaaaaatataatcaagaaagtgccaatgaatggaaacat |
14811950 |
T |
|
| Q |
202 |
tggtgaggatgatgtatt |
219 |
Q |
| |
|
| |||||| ||||||||| |
|
|
| T |
14811949 |
tagtgagggtgatgtatt |
14811932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 15259144 - 15258927
Alignment:
| Q |
3 |
aatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaaag |
102 |
Q |
| |
|
||||||| ||| || |||||||||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| | |
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|
| T |
15259144 |
aatggtcgtaagcacgagttacatgtctctacttatcaaatgtgtgtcctgatgttgtttaatgatattgatcaactaagctacaaggacattgagactg |
15259045 |
T |
|
| Q |
103 |
caaccaaaattaattccttggatttgataaagtgcttgtattccattgctcttgtgaa-gggggaaatataatcaagaaacagccgatgaatcgatatat |
201 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||| || | | | ||||| || |||||||||||||||| ||| |||||| || | || |
|
|
| T |
15259044 |
caaccaaaattaattctttgaatttgataaagtgcttgtattcgatggttttcgtgaatggaaaaaatataatcaagaaagtgccaatgaatggaaacat |
15258945 |
T |
|
| Q |
202 |
tggtgaggatgatgtatt |
219 |
Q |
| |
|
| |||||| ||||||||| |
|
|
| T |
15258944 |
tagtgagggtgatgtatt |
15258927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 14764188 - 14764086
Alignment:
| Q |
5 |
tggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaaagca |
104 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||| | | ||| |||||||| ||| |||| ||||||||||| |||||||||| ||||| |
|
|
| T |
14764188 |
tggtcagaaacatgagttaaatgtctccacctatcaaatgtgtatactcatgctgtttaataatgctgatagactaagctacagggaaattgagcaagca |
14764089 |
T |
|
| Q |
105 |
acc |
107 |
Q |
| |
|
||| |
|
|
| T |
14764088 |
acc |
14764086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 14749143 - 14749037
Alignment:
| Q |
1 |
ggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaa |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||| || ||||||||||||||||| | ||| |||||||| ||| |||| |||||||||| |||||||||| | |
|
|
| T |
14749143 |
ggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgagca |
14749044 |
T |
|
| Q |
101 |
agcaacc |
107 |
Q |
| |
|
||||||| |
|
|
| T |
14749043 |
agcaacc |
14749037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 17533433 - 17533604
Alignment:
| Q |
49 |
tcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaaagcaaccaaaattaattccttggatttgataaagtgcttgtattccat |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17533433 |
tcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaaagcaacgaaaattaattccttggatttaataaagtgcttgtattccat |
17533532 |
T |
|
| Q |
149 |
tgctcttgtgaagg-gggaaatataatcaagaaacagccgatgaatcgatatattggtgaggatgatgtatt |
219 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17533533 |
ggctctcgtgaaggatggaaatataatcaagaaagagccgatgaatggatatattggtgaggatgatgtatt |
17533604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 17522031 - 17522248
Alignment:
| Q |
3 |
aatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaaag |
102 |
Q |
| |
|
||||||| ||| || |||||||||||||| || ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||| | |
|
|
| T |
17522031 |
aatggtcgtaagcacgagttacatgtctctacttatcaaatgtgtgtcctgatgttgtttaatgctattgatcaactaagctacaaggacattgagactg |
17522130 |
T |
|
| Q |
103 |
caaccaaaattaattccttggatttgataaagtgcttgtattccattgctcttgtgaa-gggggaaatataatcaagaaacagccgatgaatcgatatat |
201 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||| | | | ||||| || |||||||||||||||| ||| |||||| || | || |
|
|
| T |
17522131 |
caaccaaaattaattctttgaatttgataaagtgcttgtattccatggttttcgtgaatggaaaaaatataatcaagaaagtgccaatgaatggaaacat |
17522230 |
T |
|
| Q |
202 |
tggtgaggatgatgtatt |
219 |
Q |
| |
|
| |||||| ||||||||| |
|
|
| T |
17522231 |
tagtgagggtgatgtatt |
17522248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 17564411 - 17564513
Alignment:
| Q |
5 |
tggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaaagca |
104 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||| | | ||| |||||||| ||| |||| ||||||||||| |||||||||| ||||| |
|
|
| T |
17564411 |
tggtcagaaacatgagttaaatgtctccacctatcaaatgtgtatactcatgctgtttaataatgctgatagactaagctacagggaaattgagcaagca |
17564510 |
T |
|
| Q |
105 |
acc |
107 |
Q |
| |
|
||| |
|
|
| T |
17564511 |
acc |
17564513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 17621250 - 17621145
Alignment:
| Q |
1 |
ggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaa |
100 |
Q |
| |
|
|||| ||||| | ||||| |||| ||||||||||||||||||||||||| | ||| |||||||| ||| |||| |||||||||||||||||||||| | |
|
|
| T |
17621250 |
ggaaaggtcagagacatgtgttaaatgtctccacctatcaaatgtgtgtactcatgctgtttaataatgctgatagactaagctacaaggaaattgagca |
17621151 |
T |
|
| Q |
101 |
agcaac |
106 |
Q |
| |
|
|||||| |
|
|
| T |
17621150 |
agcaac |
17621145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 15194631 - 15194527
Alignment:
| Q |
2 |
gaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaaa |
101 |
Q |
| |
|
||||||||| |||||||||||| |||| || ||||||||||||||||| | ||| | |||||| ||| |||| | |||||||||||||||||||| || |
|
|
| T |
15194631 |
gaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctatttaataatgctgatagattaagctacaaggaaattgagcaa |
15194532 |
T |
|
| Q |
102 |
gcaac |
106 |
Q |
| |
|
||||| |
|
|
| T |
15194531 |
gcaac |
15194527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 15205316 - 15205212
Alignment:
| Q |
2 |
gaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaaa |
101 |
Q |
| |
|
||||||||| |||||||||||| |||| || ||||||||||||||||| | ||| | |||||| ||| |||| | |||||||||||||||||||| || |
|
|
| T |
15205316 |
gaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctatttaataatgctgatagattaagctacaaggaaattgagcaa |
15205217 |
T |
|
| Q |
102 |
gcaac |
106 |
Q |
| |
|
||||| |
|
|
| T |
15205216 |
gcaac |
15205212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 15215049 - 15214945
Alignment:
| Q |
2 |
gaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaaa |
101 |
Q |
| |
|
||||||||| |||||||||||| |||| || ||||||||||||||||| | ||| | |||||| ||| |||| | |||||||||||||||||||| || |
|
|
| T |
15215049 |
gaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctatttaataatgctgatagattaagctacaaggaaattgagcaa |
15214950 |
T |
|
| Q |
102 |
gcaac |
106 |
Q |
| |
|
||||| |
|
|
| T |
15214949 |
gcaac |
15214945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 24394612 - 24394507
Alignment:
| Q |
1 |
ggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgagaa |
100 |
Q |
| |
|
|||| ||||| || ||||||||| ||||||| ||||| |||||||||||| | ||| | || ||| ||| |||| |||| ||||||||||| |||||| | |
|
|
| T |
24394612 |
ggaagggtcagaagcatgagttaaatgtctctacctaccaaatgtgtgtccttatgcttttcaataatgctgataaacttagctacaaggagattgagca |
24394513 |
T |
|
| Q |
101 |
agcaac |
106 |
Q |
| |
|
|||||| |
|
|
| T |
24394512 |
agcaac |
24394507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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