View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8724_high_2 (Length: 582)
Name: NF8724_high_2
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8724_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 73 - 571
Target Start/End: Original strand, 47765955 - 47766453
Alignment:
| Q |
73 |
tatgcgtttataagtgagattattatcattttaatatggttcaattaatcccaacacaacttttaaatagtatttaagtctatccattcaggccacttag |
172 |
Q |
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| T |
47765955 |
tatgcgtttataagtgagattattatcattttaatatggttcaattaatcccaacataacttttaaatagtatttaagtctatccattcaggccacttaa |
47766054 |
T |
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| Q |
173 |
gtctcgtttcagatgtccattcataaacgtgagtaccttataagtcgattttatagacccaagttagattctattaataattacatgagacaaaaatgct |
272 |
Q |
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| T |
47766055 |
atctcgtttcagatgtccattcataaacgtaagtaccttataagtcgattttatagacccaagttagattctattaataattacatgagacaaaaatgct |
47766154 |
T |
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| Q |
273 |
ttgtggttcaaaataaggctcactgttcactttgttgttgcttttcaagaaggaacggtgtcttattctaacacaaagtgcttctggttaattaatgact |
372 |
Q |
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| T |
47766155 |
ttgtggttcaaaataaggctcactgttcactttgttgttgcttttcaagaaggaacggtgtcttattctaacacaaagtgcttctggttaattaatgact |
47766254 |
T |
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| Q |
373 |
caaattttaattcattttttgtagaggtgattagcttctaataacagtttagcccttttcttgttctttgtttgtttgttgatgatattgaatagtgaag |
472 |
Q |
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| T |
47766255 |
caaattttgaagaattttttgtagaggtgattagcttctaataacagtttagcctttttcttgttctttgtttgtttgttgatgatattgaatagtgaag |
47766354 |
T |
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| Q |
473 |
aaattaagtccgtgaatttctttctttcttatttggttggctgttactttatcatctcactcacacttttcttgtttgatcaacatctgtctgatgtcc |
571 |
Q |
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| T |
47766355 |
aaattaagtccgtgaatttctttctttcttgtttggttggctgttactttatcatctcactcacacttttcttgtttgatcaacatctgtcttatgtcc |
47766453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 47765829 - 47765903
Alignment:
| Q |
1 |
tgttacgtataacttcatctcaccttaaatctaactcaaaggtactacttaacctcttttataacactaaattat |
75 |
Q |
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| T |
47765829 |
tgttacgtataacttcatctcaccttaaatctaactcaaaggtactacttaacctcttttataacactaaattat |
47765903 |
T |
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