View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8724_high_3 (Length: 463)

Name: NF8724_high_3
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8724_high_3
NF8724_high_3
[»] chr8 (9 HSPs)
chr8 (114-443)||(1343264-1343593)
chr8 (114-443)||(1355994-1356323)
chr8 (1-89)||(1343146-1343234)
chr8 (165-439)||(1349764-1350035)
chr8 (1-89)||(1356353-1356441)
chr8 (171-399)||(11366585-11366810)
chr8 (121-280)||(1353150-1353291)
chr8 (156-437)||(1360413-1360691)
chr8 (349-436)||(1353313-1353403)
[»] chr3 (1 HSPs)
chr3 (288-442)||(24617857-24618011)
[»] chr7 (3 HSPs)
chr7 (194-267)||(13589841-13589914)
chr7 (206-267)||(29389381-29389442)
chr7 (290-399)||(29389252-29389361)
[»] chr2 (4 HSPs)
chr2 (151-259)||(43369386-43369494)
chr2 (182-267)||(43365227-43365312)
chr2 (290-420)||(43365080-43365210)
chr2 (289-374)||(43369274-43369359)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 114 - 443
Target Start/End: Original strand, 1343264 - 1343593
Alignment:
Q  114 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1343264 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttgtgtgtggcttcaaacctatgatggttc 1343363  T
Q  214 aatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaagagttaatattacttcctcaacaaggatcttccaagacttctccaata 313  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1343364 aatccaacaggtggaacaagagattgcaatgttttgtccttttatatgtcaagagttaatattacttcctcaacaaggatcttccaagacttctccaata 1343463  T
Q  314 tgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtctt 413  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1343464 tgtcttcctcaacaagtcactcctgcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtctt 1343563  T
Q  414 atgatgagaaatttgttaggatagacgccc 443  Q
    ||||||||||||| ||||||||||||||||    
T  1343564 atgatgagaaattcgttaggatagacgccc 1343593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 114 - 443
Target Start/End: Complemental strand, 1356323 - 1355994
Alignment:
Q  114 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1356323 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttgtgtgtggcttcaaacctatgatggttc 1356224  T
Q  214 aatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaagagttaatattacttcctcaacaaggatcttccaagacttctccaata 313  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1356223 aatccaacatgtggaacaagagattgcaatgttttgtccttttatatgtcaagagttaatattacttcctcaacaaggatcttccaagacttctccaata 1356124  T
Q  314 tgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtctt 413  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1356123 tgtcttcctcaacaagtcactcctgcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtctt 1356024  T
Q  414 atgatgagaaatttgttaggatagacgccc 443  Q
    ||||||||||||| ||||||||||||||||    
T  1356023 atgatgagaaattcgttaggatagacgccc 1355994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 1343146 - 1343234
Alignment:
Q  1 taaaaagaaaacaaatcttctctgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 89  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1343146 taaaaagaaaacaaatcttctttgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 1343234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 165 - 439
Target Start/End: Original strand, 1349764 - 1350035
Alignment:
Q  165 aaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtca 264  Q
    ||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||| |||  ||||| ||||  ||    
T  1349764 aaactgagatgatgaattcttatgtgtggcttcaaacttgtgatggttcaatccaacaagtagatcaagagattgcaatgatttcccctttcatattaca 1349863  T
Q  265 agagttaatattacttcctcaacaaggatcttccaagacttctccaatatgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgattat 364  Q
    |||   ||||||||       |   ||||||| ||||| ||||||||||||||||||||||||||| | ||||||| | || | || |||||||||||||    
T  1349864 aga---aatattacaaaaaggaactggatcttgcaagagttctccaatatgtcttcctcaacaagtaagtccttcattgttgagctcaattcttgattat 1349960  T
Q  365 tgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtcttatgatgagaaatttgttaggatagac 439  Q
    |||| |||||||||| |  |||| | ||| ||||| ||| |||| |  ||||||| |||||||||||||||||||    
T  1349961 tgtcaatttcatcacatacaaggccactccaacaaggaaagaaaattgtatgatgcgaaatttgttaggatagac 1350035  T

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Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1356441 - 1356353
Alignment:
Q  1 taaaaagaaaacaaatcttctctgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 89  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1356441 taaaaagaaaacaaatcttctttgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 1356353  T

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Target: chr8; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 171 - 399
Target Start/End: Original strand, 11366585 - 11366810
Alignment:
Q  171 agatgatgaatccttttgtgtggcttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaagagtt 270  Q
    |||||||||| |||| ||||||||||||||| |  ||||  ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||       
T  11366585 agatgatgaagccttatgtgtggcttcaaacttccgatgaatcaatccaacaagtggaacaagagattgcgatgttttgtccatttatatgtcaaga--- 11366681  T
Q  271 aatattacttcctcaacaaggatcttccaagacttctccaatatgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgattattgtcga 370  Q
    ||||||||         | ||| ||||||||| || | || ||||||||||||||||||||| |||| ||||  | | ||||||||||||||| ||||||    
T  11366682 aatattacaaaaaggcaatggaacttccaagaattgtgcagtatgtcttcctcaacaagtcagtcctgcaatgctgagcttaattcttgattactgtcga 11366781  T
Q  371 tttcatcacgtgaaaggacgctcaaacaa 399  Q
    |||||||| ||   ||| |||||||||||    
T  11366782 tttcatcaagtactaggccgctcaaacaa 11366810  T

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Target: chr8; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 121 - 280
Target Start/End: Original strand, 1353150 - 1353291
Alignment:
Q  121 tatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttcaatccaa 220  Q
    ||||||||||||| |||||||||  ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||                | |||    
T  1353150 tatttttgttcattgagtcaaat--tgttcttctcagatgtcaaaaactgagatgatgaattcttgtgtgtggcttcaa----------------ttcaa 1353231  T
Q  221 caagtggaacaagagattgcaatgttttgtccttttatatgtcaagagttaatattactt 280  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  1353232 caagtggaacaagagattgcaatattttgcccttttatatgtcaagaattaatattactt 1353291  T

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Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 437
Target Start/End: Original strand, 1360413 - 1360691
Alignment:
Q  156 agatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttt 255  Q
    |||||||| ||||||||||| |||| |||| ||| |||||| |||| | ||| | ||||||||||  ||||||   ||||||||||||| |||| |||||    
T  1360413 agatgtcagaaactgagatggtgaagccttatgtatggcttaaaacttgtgacgattcaatccaagtagtggatagagagattgcaatggtttgcccttt 1360512  T
Q  256 tatatgtcaagagttaatattacttcctcaacaaggatcttccaagacttctccaatatgtcttcctcaacaagtcactccttcaatcttaaccttaatt 355  Q
    ||||||||||||   ||||| |           |||||||||||||| |||| |||||||||||||| || |||| | || | |||| || | |||||||    
T  1360513 tatatgtcaaga---aatatcagaaaaagggacaggatcttccaagagttctgcaatatgtcttcctgaaaaagtaagtcttgcaatgttgaacttaatt 1360609  T
Q  356 cttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtcttatgatgagaaatttgttaggatag 437  Q
    ||||||||||||| |||||||||| |  |||| | ||||||||| ||| |||| |  ||||||||| |||||||||||||||    
T  1360610 cttgattattgtctatttcatcacatacaaggccactcaaacaaggaaagaaaattgtatgatgaggaatttgttaggatag 1360691  T

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Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 436
Target Start/End: Original strand, 1353313 - 1353403
Alignment:
Q  349 cttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaa---caaagaacgaaagtcttatgatgagaaatttgttaggata 436  Q
    ||||||||||||||||||||||||||||||||| ||||| || |||||   ||||||||||||||| |||| |||||||| ||||||||||    
T  1353313 cttaattcttgattattgtcgatttcatcacgtaaaaggccgttcaaacgtcaaagaacgaaagtcgtatgttgagaaatctgttaggata 1353403  T

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Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 288 - 442
Target Start/End: Original strand, 24617857 - 24618011
Alignment:
Q  288 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaagg 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||  ||||    
T  24617857 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaagg 24617956  T
Q  388 acgctcaaacaaagaacgaaagtcttatgatgagaaatttgttaggatagacgcc 442  Q
     | ||||||||| |||| |||||| |||||||| ||||| ||| |||||||||||    
T  24617957 ccactcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagacgcc 24618011  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 13589841 - 13589914
Alignment:
Q  194 cttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaaga 267  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  13589841 cttcaaacttgtgatggttcaatccaacaagtggaacaagagattgcaatgttttgccctttcatatgtcaaga 13589914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 29389442 - 29389381
Alignment:
Q  206 gatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaaga 267  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||| ||| |||| ||||||||    
T  29389442 gatggttcaattcaacaggtggaacaagaaattgcaatgttttgccctcttatttgtcaaga 29389381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 399
Target Start/End: Complemental strand, 29389361 - 29389252
Alignment:
Q  290 ggatcttccaagacttctccaatatgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggac 389  Q
    ||||||||||| | || | | |||||||||||| || ||||| ||||| | || || | |||| |||||||||||||||| |||||||| ||   ||| |    
T  29389361 ggatcttccaaaaattgtgcgatatgtcttcctgaaaaagtctctcctgctatgttgagcttagttcttgattattgtcgttttcatcaagtaccaggcc 29389262  T
Q  390 gctcaaacaa 399  Q
    ||||||||||    
T  29389261 gctcaaacaa 29389252  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 43369494 - 43369386
Alignment:
Q  151 ttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgt 250  Q
    |||| |||||||  ||||| ||||||||||  ||| ||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||     
T  43369494 ttctcagatgtcggaaactaagatgatgaagtcttatgtgtggcttcaaacttctgatggttcaattcaacaagtggaacaagatattgcaatgttttgc 43369395  T
Q  251 ccttttata 259  Q
    || ||||||    
T  43369394 ccatttata 43369386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 43365312 - 43365227
Alignment:
Q  182 ccttttgtgtggcttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaaga 267  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||| ||||| |||||||||||||| || ||||||||| ||||    
T  43365312 ccttatgtgtggcttcaaacttctgatggttcaacccaacaagtggagcaagatattgcaatgttttgcccatttatatgtgaaga 43365227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 420
Target Start/End: Complemental strand, 43365210 - 43365080
Alignment:
Q  290 ggatcttccaagacttctccaatatgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggac 389  Q
    ||||||||||||| || | || |||||||||||||||| |||| | || |||| |  | ||| |||||| ||||||||||||||||||| |    ||| |    
T  43365210 ggatcttccaagaattgtgcagtatgtcttcctcaacaggtcagttctccaatgtggagcttgattcttaattattgtcgatttcatcaagcaccaggcc 43365111  T
Q  390 gctcaaacaaagaacgaaagtcttatgatga 420  Q
    |||||||||| ||||||||||| ||||||||    
T  43365110 gctcaaacaaggaacgaaagtcctatgatga 43365080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 374
Target Start/End: Complemental strand, 43369359 - 43369274
Alignment:
Q  289 aggatcttccaagacttctccaatatgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgattattgtcgatttc 374  Q
    |||||||||||||| || | ||| ||||||||||||||| || | | ||||||| |  | |||||||||| |||||||||||||||    
T  43369359 aggatcttccaagaattgtgcaacatgtcttcctcaacaggttagttcttcaatgtggagcttaattcttaattattgtcgatttc 43369274  T

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