View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8724_low_10 (Length: 326)

Name: NF8724_low_10
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8724_low_10
NF8724_low_10
[»] chr7 (6 HSPs)
chr7 (215-309)||(14804169-14804263)
chr7 (215-309)||(15251163-15251257)
chr7 (77-173)||(14804031-14804127)
chr7 (77-173)||(15251025-15251121)
chr7 (226-309)||(14811598-14811681)
chr7 (226-309)||(15258593-15258676)
[»] chr5 (3 HSPs)
chr5 (223-309)||(17533839-17533925)
chr5 (226-309)||(17522499-17522582)
chr5 (80-157)||(17534066-17534143)
[»] chr1 (1 HSPs)
chr1 (226-306)||(44902095-44902175)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 14804169 - 14804263
Alignment:
Q  215 ctagtaactatatttcttcatgcaagatacctatacaaattagtgtcaatactgtccctctcctagtaatccctatcaataagagattcaatcct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14804169 ctagtaactatatttcttcatgcaagatacctatacaaattagtgtcaatactgtccctctccaagtaatccctatcaataagagattcaatcct 14804263  T

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Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 15251163 - 15251257
Alignment:
Q  215 ctagtaactatatttcttcatgcaagatacctatacaaattagtgtcaatactgtccctctcctagtaatccctatcaataagagattcaatcct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15251163 ctagtaactatatttcttcatgcaagatacctatacaaattagtgtcaatactgtccctctccaagtaatccctatcaataagagattcaatcct 15251257  T

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Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 14804031 - 14804127
Alignment:
Q  77 gcattagaaatattactcactctgaaaccagccaaattttaaatcatatccacaaaacaggaaaaataagaatacatcaatttgttaaggtagacag 173  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14804031 gcattagaaatattactcacttagaaaccagccaaattttaaatcatatccacaaaacaggaaaaataagaatacatcaatttgttaaggtagacag 14804127  T

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Target: chr7; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 15251025 - 15251121
Alignment:
Q  77 gcattagaaatattactcactctgaaaccagccaaattttaaatcatatccacaaaacaggaaaaataagaatacatcaatttgttaaggtagacag 173  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15251025 gcattagaaatattactcacttagaaaccagccaaattttaaatcatatccacaaaacaggaaaaataagaatacatcaatttgttaaggtagacag 15251121  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 14811598 - 14811681
Alignment:
Q  226 atttcttcatgcaagatacctatacaaattagtgtcaatactgtccctctcctagtaatccctatcaataagagattcaatcct 309  Q
    ||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| ||||||| || ||||||||||||||||||||    
T  14811598 atttcttcatgcaagatacctattcaaattattgtgaatattgtccctctccaagtaatctctttcaataagagattcaatcct 14811681  T

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Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 15258593 - 15258676
Alignment:
Q  226 atttcttcatgcaagatacctatacaaattagtgtcaatactgtccctctcctagtaatccctatcaataagagattcaatcct 309  Q
    ||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| ||||||| || ||||||||||||||||||||    
T  15258593 atttcttcatgcaagatacctattcaaattattgtgaatattgtccctctccaagtaatctctttcaataagagattcaatcct 15258676  T

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Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 17533925 - 17533839
Alignment:
Q  223 tatatttcttcatgcaagatacctatacaaattagtgtcaatactgtccctctcctagtaatccctatcaataagagattcaatcct 309  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||    
T  17533925 tatatttcttcatgcaagatacctatacaaattattgtcaatactgtccctctccaagtaatctctttcaataagagattcaatcct 17533839  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 17522582 - 17522499
Alignment:
Q  226 atttcttcatgcaagatacctatacaaattagtgtcaatactgtccctctcctagtaatccctatcaataagagattcaatcct 309  Q
    ||||||| |||| |||||||||||||||||| |||||||| ||||||||||| ||||||| || ||||||||||| ||||||||    
T  17522582 atttctttatgctagatacctatacaaattattgtcaatattgtccctctccaagtaatctctttcaataagagactcaatcct 17522499  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 17534143 - 17534066
Alignment:
Q  80 ttagaaatattactcactctgaaaccagccaaattttaaatcatatccacaaaacaggaaaaataagaatacatcaat 157  Q
    ||||||||||| ||||||  ||||| ||||| ||||| |||||||||||||||||||||||||||| || ||||||||    
T  17534143 ttagaaatattgctcacttagaaacaagccagattttgaatcatatccacaaaacaggaaaaataacaacacatcaat 17534066  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 44902175 - 44902095
Alignment:
Q  226 atttcttcatgcaagatacctatacaaattagtgtcaatactgtccctctcctagtaatccctatcaataagagattcaat 306  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| || |||||||||||||||||    
T  44902175 atttcttcatgcaagatacctatacaaattattgtcaatattgtccctctccaagtaatctctttcaataagagattcaat 44902095  T

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