View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8724_low_14 (Length: 240)
Name: NF8724_low_14
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8724_low_14 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 33569279 - 33569077
Alignment:
| Q |
15 |
cagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcattgattgattgattg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33569279 |
cagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcattgattgattga--- |
33569183 |
T |
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| Q |
115 |
agattttgaagaattgttaacaaagaacatggcagagtaacaaatatatataccagtgcagcaaaaacagttccaaatgtgctgtcatagacaacaaagg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33569182 |
-gattttgaagaattgttaacaaagaacatggcagagtaacaaatatatataccagtgcagcaaaaacagttccaaatgtgctgtcatagacaacaaagg |
33569084 |
T |
|
| Q |
215 |
caaaact |
221 |
Q |
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||||||| |
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| T |
33569083 |
caaaact |
33569077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 5946443 - 5946243
Alignment:
| Q |
17 |
gagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcattgattgattgattgag |
116 |
Q |
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|||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
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| T |
5946443 |
gagatcacaacagatccatcgcctgcaataccttagtacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcattcattgatgggttgag |
5946344 |
T |
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| Q |
117 |
attttgaagaattgttaacaaagaacatggcagagtaacaaatatatataccagtgcagcaaaaacagttccaaatgtgctgtcatagacaacaaaggca |
216 |
Q |
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| T |
5946343 |
attttgaagaattgttgacaaagaacatggtagagtaacaaatatag----cagtgcagaaaaaacagttccaactatgctgtcataaacaacaaaggca |
5946248 |
T |
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| Q |
217 |
aaact |
221 |
Q |
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||||| |
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| T |
5946247 |
aaact |
5946243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 19026112 - 19025963
Alignment:
| Q |
17 |
gagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcattgattgattgattgag |
116 |
Q |
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|||||||||||||||||||| || |||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||| |
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| T |
19026112 |
gagatcacaacagatccatcgcctacaataccctagtacagcttcaatccactgtcagaaccctgcataaaaaacaaacatcattcattgatgggttgag |
19026013 |
T |
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| Q |
117 |
attttgaagaattgttaacaaagaacatggcagagtaacaaatatatata |
166 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
19026012 |
attttgaagaattgttgacaaagaacatggtagagtaacaaatatatata |
19025963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 21495018 - 21495151
Alignment:
| Q |
96 |
atcattgattgattgattgagattttgaagaattgttaacaaagaacatggcagagtaacaa--------atatatataccagtgcagcaaaaacagttc |
187 |
Q |
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|||||| |||||| | ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| |
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| T |
21495018 |
atcattcattgatgggttgagattttgaagaattgttgacaaagaacatggtagagtaacaaatatatatatatatatagcagtgcagaaaaaacagttc |
21495117 |
T |
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| Q |
188 |
caaatgtgctgtcatagacaacaaaggcaaaact |
221 |
Q |
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||| |||||||||||| |||||||||| |||||| |
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| T |
21495118 |
caactgtgctgtcataaacaacaaaggaaaaact |
21495151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 19286159 - 19286244
Alignment:
| Q |
15 |
cagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcatt |
101 |
Q |
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||||||||||||||||||||||| ||| |||| || | |||||||||||| || ||||| ||||||||||||||||||||||||||| |
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| T |
19286159 |
cagagatcacaacagatccatcacctgtaatagcc-agtacaacttcaatgcatcatcaaaaccctgcataaaaaacaaacatcatt |
19286244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 28018 - 27936
Alignment:
| Q |
18 |
agatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcatt |
101 |
Q |
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|||||||||||||||||||| || |||||||| | |||||||||||| ||| || | ||||||||||||||||||||||||||| |
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| T |
28018 |
agatcacaacagatccatcaccttcaataccc-agtacaacttcaatgcacgattaaaaccctgcataaaaaacaaacatcatt |
27936 |
T |
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