View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8724_low_5 (Length: 369)
Name: NF8724_low_5
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8724_low_5 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Original strand, 205894 - 206247
Alignment:
| Q |
16 |
catatcactgccgtcattgcgcttggaatggttgagatggcattttggtattttgagtatgctaattttaatgctacaggtagtaggcctatgggaatta |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
205894 |
catattactgccgtcattgcgcttggaatggttgagatggcattttggtattttgagtatgctaattttaatgctactggtagtaggcctatgggaatta |
205993 |
T |
|
| Q |
116 |
ctatatgggctgttacttttacttctgttaagaagacgctttccaggttgcttttgttggttgtgtctatgggatatggtgttgttaggccaactctcgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
205994 |
ctatatgggctgttacttttacttctgttaagaagacgctttccaggttgcttttgttggttgtgtctatgggatatggtgttgttaggccaacgctctt |
206093 |
T |
|
| Q |
216 |
tgaaggttttgtatctagagttacggttcttggggggttctattttgttgcatgtgaagtgtttgagctttttgagcatttgggaaacatcaatgacttt |
315 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
206094 |
tgagggttttgtatctagagttacggttcttggggggttctattttgttgcatgtgaagtgtttgagctttttgagcatttgggaaacatcaatgacttt |
206193 |
T |
|
| Q |
316 |
tctgggaaatctaaactgttgttggtgctacctgttgtttgccttgactcatgc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
206194 |
tctgggaaatctaaactgttgttggtgctacctgttgtttgccttgactcatgc |
206247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Original strand, 320731 - 321084
Alignment:
| Q |
16 |
catatcactgccgtcattgcgcttggaatggttgagatggcattttggtattttgagtatgctaattttaatgctacaggtagtaggcctatgggaatta |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
320731 |
catattactgccgtcattgcgcttggaatggttgagatggcattttggtattttgagtatgctaattttaatgctactggtagtaggcctatgggaatta |
320830 |
T |
|
| Q |
116 |
ctatatgggctgttacttttacttctgttaagaagacgctttccaggttgcttttgttggttgtgtctatgggatatggtgttgttaggccaactctcgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
320831 |
ctatatgggctgttacttttacttctgttaagaagacgctttccaggttgcttttgttggttgtgtctatgggatatggtgttgttaggccaacgctctt |
320930 |
T |
|
| Q |
216 |
tgaaggttttgtatctagagttacggttcttggggggttctattttgttgcatgtgaagtgtttgagctttttgagcatttgggaaacatcaatgacttt |
315 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
320931 |
tgagggttttgtatctagagttacggttcttggggggttctattttgttgcatgtgaagtgtttgagctttttgagcatttgggaaacatcaatgacttt |
321030 |
T |
|
| Q |
316 |
tctgggaaatctaaactgttgttggtgctacctgttgtttgccttgactcatgc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
321031 |
tctgggaaatctaaactgttgttggtgctacctgttgtttgccttgactcatgc |
321084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 28587558 - 28587467
Alignment:
| Q |
61 |
tggtattttgagtatgctaattttaatgctacaggtagtaggcctatgggaattactatatgggctgttacttttacttctgttaagaagac |
152 |
Q |
| |
|
||||||||||||||||| ||||| ||| | ||||| || ||||| |||| |||||| ||||||| || ||||| ||| |||| |||||||| |
|
|
| T |
28587558 |
tggtattttgagtatgcaaatttcaattcgacaggaagcaggccaatggtaattacagtatgggccgtgactttcactgctgtcaagaagac |
28587467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University