View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8724_low_6 (Length: 357)
Name: NF8724_low_6
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8724_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 124 - 340
Target Start/End: Original strand, 9122177 - 9122394
Alignment:
| Q |
124 |
accaatcagtagactcaggctggcttgtttccaataaggagacctttttccaccagtt-gagacacctcttaaacctatcgccctccccccgcgatgatc |
222 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9122177 |
accaattagtagactcaggctgacttgtttccaataaggacatctttttccaccagtttgagacacctcttaaacctatcaccctccccccgcgatgatc |
9122276 |
T |
|
| Q |
223 |
ccacatagaccttttcgcatatctcgctccaataatatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaaga |
322 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
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| T |
9122277 |
ccacatagacctttttgcatatctcgctccaataatatctttccacagagcctcccatcttgtgatcaacctccaacgccactttcccaaaaggacaaga |
9122376 |
T |
|
| Q |
323 |
ttaaccaatcttagatct |
340 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
9122377 |
ttaaccaatcttagatct |
9122394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9121989 - 9122059
Alignment:
| Q |
1 |
ttgtatagaaactttgaacaagcctagggacacaaattctcaaaggaataacacccaactagggacctttt |
71 |
Q |
| |
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||||||||||||||||||||||||||||| ||| ||||||||| |||||| ||||| |||||||||||||| |
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| T |
9121989 |
ttgtatagaaactttgaacaagcctagggtcacgaattctcaatggaatagcacccgactagggacctttt |
9122059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 5219775 - 5219660
Alignment:
| Q |
81 |
gtagatcgacaatctctaaccttcgtgaggatattgttagagaaccaatcagtagactcaggctggcttgtttccaataaggagacctttttccaccag- |
179 |
Q |
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| T |
5219775 |
gtagatcaacaatctataaccttcttgaggatactttcagagaaccaattagtagactcaggctaactcgatcccaataaggagatctctttccactagt |
5219676 |
T |
|
| Q |
180 |
ttgagacacctcttaa |
195 |
Q |
| |
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|||||||||||||||| |
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|
| T |
5219675 |
ttgagacacctcttaa |
5219660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 18101656 - 18101563
Alignment:
| Q |
249 |
ctccaataatatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagatctct |
342 |
Q |
| |
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||||||||||||||||||||| |||||||| ||| |||| |||||||||| ||||| | || ||| |||||||||||||||||| |||||| |
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| T |
18101656 |
ctccaataatatctttccacaaagcctcccctctcgtgaaaaacctccaacgtcacttccctaatagggcaagattaaccaatcttaaatctct |
18101563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 30600300 - 30600397
Alignment:
| Q |
241 |
atatctcgctccaataatatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagat |
338 |
Q |
| |
|
|||||| |||| ||||||||||||| ||| ||||| | | || ||||||||||||||| ||||| | |||||| |||||||| ||||||||||| |
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| T |
30600300 |
atatcttgctcaaataatatctttcaacaaagccttctctattttgatcaacctccaacgtcacttccccaaaagggaaagattaagcaatcttagat |
30600397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 82 - 343
Target Start/End: Original strand, 12545662 - 12545924
Alignment:
| Q |
82 |
tagatcgacaatctctaaccttcgtgaggatattgttagagaaccaatcagtagactcaggctggcttgtttccaataaggagacctttttccaccagtt |
181 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||| | | ||| ||||||||||||| |||||| || ||||||| ||||||||||| | |||||||||||| |
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|
| T |
12545662 |
tagatcgaccatctctaaccttcctgagcatactatcagataaccaatcagtaggctcaggttgacttgttttcaataaggagatcactttccaccagtt |
12545761 |
T |
|
| Q |
182 |
g-agacacctcttaaacctatcgccctccccccgcgatgatcccacatagaccttttcgcatatctcgctccaataatatctttccacagagcctcccat |
280 |
Q |
| |
|
||| || ||||||||| |||||| ||||| ||||||| ||||||||||| |||| |||||||| ||||||||||||||| |||| ||||| || | |
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|
| T |
12545762 |
tcagatacatcttaaacccatcgcctgccccctacgatgattccacatagaccctttcacatatctcactccaataatatcttcacacaaagccttccct |
12545861 |
T |
|
| Q |
281 |
cttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagatctctg |
343 |
Q |
| |
|
| ||||||||| || |||| |||||| | |||||| ||||||||| |||||||||| |||| |
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|
| T |
12545862 |
cctgtgatcaatctacaacgccacttccccaaaagggaaagattaactaatcttagatatctg |
12545924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 349
Target Start/End: Complemental strand, 13956365 - 13956038
Alignment:
| Q |
21 |
agcctagggacacaaattctcaaaggaataacacccaactagggaccttttnnnnnnntcgtagatcgacaatctctaaccttcgtgaggatattgttag |
120 |
Q |
| |
|
||||| |||| || |||||||||||||||| | |||||| ||||| ||||| | |||||||||| ||||||||| || |||| ||| | | || |
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| T |
13956365 |
agcctggggaaacgaattctcaaaggaatagctcccaaccagggatcttttagtaaatttgtagatcgaccatctctaacatttttgagtatactatcag |
13956266 |
T |
|
| Q |
121 |
agaaccaatcagtagactcaggctggcttgtttccaataaggagacctttttccaccagttgagacacctcttaaacctatcgccctccccccgcgatga |
220 |
Q |
| |
|
||||||||||| |||||| || ||| | |||| |||||||||||| || || |||||||| ||||||||||||||| | || |||||| ||||| |
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|
| T |
13956265 |
agaaccaatcaatagactgagactgacatgttcccaataaggagatctccttgcaccagttt-gacacctcttaaacccaccgtgtgccccccatgatga |
13956167 |
T |
|
| Q |
221 |
tcccacatagaccttttcgcatatctcgctccaataatatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaa |
320 |
Q |
| |
|
|| |||||| || |||| |||||| ||||||||||||| ||| || | || || || |||||||||||||||||||| |||||| |||||| || |
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|
| T |
13956166 |
tctcacataagccctttcaaatatcttgctccaataatatattttcataaagtctaccctcttgtgatcaacctccaacgccacttcctcaaaagggaaa |
13956067 |
T |
|
| Q |
321 |
gattaaccaatcttagatctctgctactc |
349 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| |
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|
| T |
13956066 |
gattaactaatcttaaatctctgatactc |
13956038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 337
Target Start/End: Complemental strand, 2487858 - 2487673
Alignment:
| Q |
154 |
ccaataaggagacctttttccaccagtt-gagacacctcttaaacctatcgccctccccccgcgatgatcccacatagaccttttcgcatatctcgctcc |
252 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||||||||||||| | ||||| |||||| | |||||| || ||||| |||| |||||| ||||| |
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|
| T |
2487858 |
ccaataaggagatctcattccaccagtttgagacacctcttaaaacccccgcccgccccccacaatgatcacattgagaccctttcagatatctggctcc |
2487759 |
T |
|
| Q |
253 |
aataatatctttccacagagcctcc-catcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttaga |
337 |
Q |
| |
|
|||||||||||||||| ||||||| | | | ||||||||||||| |||||||| | ||||| |||||||||||||||||| |
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|
| T |
2487758 |
tataatatctttccacaaagcctcctccccctttgatcaacctccatcaccacttgcccaaaagagttagattaaccaatcttaga |
2487673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 7809117 - 7809225
Alignment:
| Q |
234 |
ttttcgcatatctcgctccaataatatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatct |
333 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||| | |||||| || |||||||||||||||| |||||| | | || ||||||||||| ||||| |
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|
| T |
7809117 |
tttttgcatatctcgctccaataatatctttcaacaaaacctcccctcctgtgatcaacctccaatgccacttccctacaaagacaagattaatcaatca |
7809216 |
T |
|
| Q |
334 |
tagatctct |
342 |
Q |
| |
|
||||||||| |
|
|
| T |
7809217 |
tagatctct |
7809225 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 30869264 - 30869162
Alignment:
| Q |
94 |
ctctaaccttcgtgaggatattgttagagaaccaatcagtagactcaggctggcttgtttccaataaggagacctttttccaccag-ttgagacacctct |
192 |
Q |
| |
|
||||||| ||| |||||||| | |||||||||||||||||| || |||| || |||| | |||||||||| | || |||||||||| |||||||| |||| |
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|
| T |
30869264 |
ctctaacattcatgaggatacttttagagaaccaatcagtaaacccaggttgacttgatcccaataaggatatctctttccaccagtttgagacatctct |
30869165 |
T |
|
| Q |
193 |
taa |
195 |
Q |
| |
|
||| |
|
|
| T |
30869164 |
taa |
30869162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 14729405 - 14729498
Alignment:
| Q |
205 |
cctccccccgcgatgatcccacatagaccttttcgcatatctcgctccaataatatctttccacagagcctcccatcttgtgatcaacctccaa |
298 |
Q |
| |
|
||||||||| |||||||||||| | ||| |||| |||||| ||||||||||||||||| | || ||||| | || |||||||||||||||| |
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|
| T |
14729405 |
cctccccccacgatgatcccacgaaaaccctttcaaatatcttgctccaataatatcttttcgcaaagcctactctcgtgtgatcaacctccaa |
14729498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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