View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8724_low_8 (Length: 327)
Name: NF8724_low_8
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8724_low_8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 39347121 - 39346814
Alignment:
| Q |
4 |
ggagaagcagagaatcagtacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttataaatcagacataagtttataag |
103 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
39347121 |
ggagaaacagaaaatcaatacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttataaaccagacataagtttataag |
39347022 |
T |
|
| Q |
104 |
tgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnnnnnnnntccttcagccatcacaattttgattgaaactacatacctagatag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39347021 |
tgaatgaaagaccatggtcaaaccatatatccatccgtttagagaaaaaaaaaaatccttcagccatcacaattttgattgaaactacatacctagatag |
39346922 |
T |
|
| Q |
204 |
tgccggcacaaccaactttgnnnnnnntgaaatcatttctgcccaaacaatattcataagctaaacattcagatcatatattttacctataaaaacaact |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39346921 |
tgccggcacaaccaactttgaaaaaaatgaaatcatttctgccaaaacaatattcataagctaaatattcagatcatatattttacctataaaaacaact |
39346822 |
T |
|
| Q |
304 |
ttactttt |
311 |
Q |
| |
|
|||||||| |
|
|
| T |
39346821 |
ttactttt |
39346814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 4012964 - 4012658
Alignment:
| Q |
4 |
ggagaagcagagaatcagtacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttataaatcagacataagtttataag |
103 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4012964 |
ggagaaacagaaaatcaatacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttataaatcagacataagtttataag |
4012865 |
T |
|
| Q |
104 |
tgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnnnnnnnntccttcagccatcacaattttgattgaaactacatacctagatag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4012864 |
tgaatgaaagaccatggtcaaaccatatatccatccgtttagag-aaaaaaaaaatccttcagccatcacaattttgattgaaactacatacctagatag |
4012766 |
T |
|
| Q |
204 |
tgccggcacaaccaactttgnnnnnnntgaaatcatttctgcccaaacaatattcataagctaaacattcagatcatatattttacctataaaaacaact |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
4012765 |
tgccggcacaaccaactttgaaaaaaatgaaatcatttctgccaaaacaatattcataagctaaatattcagatcatatattttacctataaaaacaact |
4012666 |
T |
|
| Q |
304 |
ttactttt |
311 |
Q |
| |
|
|||||||| |
|
|
| T |
4012665 |
ttactttt |
4012658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 25879828 - 25879528
Alignment:
| Q |
4 |
ggagaagcagagaatcagtacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttataaatcagacataagtttataag |
103 |
Q |
| |
|
|||||| |||| ||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25879828 |
ggagaaacagaaaattaatacatactaaataagtaaactttaacacacttagaaagaaacggtgagaatggcttttataaatcagacataagtttataag |
25879729 |
T |
|
| Q |
104 |
tgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnnnnnnnntccttcagccatcacaattttgattgaaactacatacctagatag |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25879728 |
tgaatgaaagaccatggtcacaccatat----atccgtttagag-aaaaaaaaaatccttcagccatcacaattttgattgaaactacat-tatagatag |
25879635 |
T |
|
| Q |
204 |
tgccggcacaaccaactttgnnnnnnntgaaatcatttctgcccaaacaatattcataagctaaacattcagatcatatattttacctataaaaacaact |
303 |
Q |
| |
|
|| ||||| |||||||||| || |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25879634 |
tgtcggcataaccaacttt-aaaaaaatgcaatcatttctaccaaaacagtattcataagctaaacattcagatcatatattttacctataaaaacaact |
25879536 |
T |
|
| Q |
304 |
ttactttt |
311 |
Q |
| |
|
|||||||| |
|
|
| T |
25879535 |
ttactttt |
25879528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 2275630 - 2275324
Alignment:
| Q |
4 |
ggagaagcagagaatcagtacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttataaatcagacataagtttataag |
103 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2275630 |
ggagaaacagaaaatcaatacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttataaaccagacataagtttataag |
2275531 |
T |
|
| Q |
104 |
tgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnnnnnnnntccttcagccatcacaattttgattgaaactacatacctagatag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2275530 |
tgaatgaaagaccatggtcaaaccatatatccatccgtttagag-aaaaaaaaaatccttcagccatcacaattttgattgaaactacatacctagatag |
2275432 |
T |
|
| Q |
204 |
tgccggcacaaccaactttgnnnnnnntgaaatcatttctgcccaaacaatattcataagctaaacattcagatcatatattttacctataaaaacaact |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2275431 |
tgccggcacaaccaactttgaaaaaaatgaaatcatttctgccaaaacaatattcataagctaaatattcagatcatatattttacctataaaaacaact |
2275332 |
T |
|
| Q |
304 |
ttactttt |
311 |
Q |
| |
|
|||||||| |
|
|
| T |
2275331 |
ttactttt |
2275324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 4 - 311
Target Start/End: Original strand, 10789572 - 10789873
Alignment:
| Q |
4 |
ggagaagcagagaatcagtacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttataaatcagacataagtttataag |
103 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10789572 |
ggagaaacagaaaatcaatacatactaaataagtaaactttaacacacttagaaagaaacagtgagaatggcttttataaatcagacataagtttataac |
10789671 |
T |
|
| Q |
104 |
tgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnnnnnnnntccttcagccatcacaattttgattgaaactacatacctagatag |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10789672 |
tgaatgaaagaccatggtcacaccatat----atccgtttagagagaaaaaaaaatccttcagccatcacaattttgattgaaactacat-tatagatag |
10789766 |
T |
|
| Q |
204 |
tgccggcacaaccaactttgnnnnnnntgaaatcatttctgcccaaacaatattcataagctaaacattcagatcatatattttacctataaaaacaact |
303 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10789767 |
tgccggcataaccaactttg-aaaaaatgcaatcatttctgccaaaacaatattcataagctaaacattcagatcatatattttacctataaaaacaact |
10789865 |
T |
|
| Q |
304 |
ttactttt |
311 |
Q |
| |
|
|||||||| |
|
|
| T |
10789866 |
ttactttt |
10789873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 35348553 - 35348266
Alignment:
| Q |
4 |
ggagaagcagagaatcagtacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttataaatcagacataagtttataag |
103 |
Q |
| |
|
|||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35348553 |
ggagaaacagaaaatcaatacatacaaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttataa-------------------g |
35348473 |
T |
|
| Q |
104 |
tgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnnnnnnnntccttcagccatcacaattttgattgaaactacatacctagatag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35348472 |
tgaatgaaagaccatggtcaaaccatatatccatccgtttagagagaaaaaaaa-tccttcagccatcacaattttgattgaaactacatacctagatag |
35348374 |
T |
|
| Q |
204 |
tgccggcacaaccaactttgnnnnnnntgaaatcatttctgcccaaacaatattcataagctaaacattcagatcatatattttacctataaaaacaact |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35348373 |
tgccggcacaaccaactttgaaaaaaatgaaatcatttctgccaaaacaatattcataagctaaatattcagatcatatattttacctataaaaacaact |
35348274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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