View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8724_low_9 (Length: 326)

Name: NF8724_low_9
Description: NF8724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8724_low_9
NF8724_low_9
[»] chr3 (5 HSPs)
chr3 (15-298)||(48200184-48200468)
chr3 (171-238)||(44291038-44291105)
chr3 (187-283)||(44291413-44291509)
chr3 (149-221)||(29756171-29756242)
chr3 (143-223)||(44291429-44291509)
[»] chr2 (3 HSPs)
chr2 (107-238)||(8198567-8198697)
chr2 (107-238)||(8203327-8203457)
chr2 (149-222)||(4558874-4558947)
[»] chr5 (7 HSPs)
chr5 (143-288)||(37705051-37705195)
chr5 (149-236)||(13953485-13953571)
chr5 (149-226)||(1629760-1629837)
chr5 (149-222)||(29903563-29903636)
chr5 (189-222)||(2143379-2143412)
chr5 (143-223)||(13953347-13953427)
chr5 (197-237)||(42474908-42474948)
[»] chr6 (5 HSPs)
chr6 (107-209)||(17411200-17411299)
chr6 (143-234)||(33547799-33547889)
chr6 (149-222)||(16419660-16419732)
chr6 (185-233)||(17411092-17411140)
chr6 (188-236)||(32548253-32548301)
[»] chr7 (6 HSPs)
chr7 (149-236)||(32857940-32858027)
chr7 (143-222)||(20389705-20389783)
chr7 (149-236)||(21921012-21921098)
chr7 (189-238)||(5755636-5755685)
chr7 (149-222)||(18128480-18128553)
chr7 (15-67)||(18128330-18128382)
[»] chr1 (6 HSPs)
chr1 (153-236)||(25112517-25112600)
chr1 (149-235)||(46530210-46530296)
chr1 (149-215)||(47600619-47600685)
chr1 (190-283)||(16554303-16554396)
chr1 (142-222)||(16026108-16026188)
chr1 (148-224)||(48673381-48673457)
[»] chr8 (5 HSPs)
chr8 (149-235)||(37064652-37064737)
chr8 (137-220)||(27533147-27533230)
chr8 (184-226)||(15174998-15175040)
chr8 (187-232)||(3806998-3807043)
chr8 (197-237)||(2277210-2277250)
[»] chr4 (8 HSPs)
chr4 (152-238)||(22519772-22519858)
chr4 (149-222)||(22889646-22889719)
chr4 (149-222)||(22941310-22941383)
chr4 (149-238)||(33617860-33617949)
chr4 (188-228)||(42676843-42676883)
chr4 (107-182)||(23183801-23183874)
chr4 (143-209)||(22519381-22519447)
chr4 (178-238)||(31095272-31095332)
[»] scaffold0591 (1 HSPs)
scaffold0591 (168-222)||(3870-3923)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 298
Target Start/End: Original strand, 48200184 - 48200468
Alignment:
Q  15 tcacttacatcatttaaattatctaattgtaacaaactaatcctttaagtattttcgtaggttatttaatcgaaatttttaagattcggatgacttatat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  48200184 tcacttacatcatttaaattatctaattgtaacaaactaatcctttaagtattttcgtag-ttatttaatcgaaatttttaagattcagatgacttatat 48200282  T
Q  115 ttttaagatttgaaacccccctaaatcattacatttaaataactt--aaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaa 212  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||  |||||||||||||||||| |||||||||||||  |||||||| ||||||||||    
T  48200283 ttttaagatttgaaatcccccggaatcattacatttaaataacttaaaaagggcataattggtacagaaagaatttaaaaaactaacttattacaatcaa 48200382  T
Q  213 ttaacttaaaagacttaagtggtacgnnnnnnntttaaatgaccaattcgttacaattaaataagttaaaagacttttagtataat 298  Q
    |||| |||||||||||||| ||||||        |||||||| |||||| ||||||||||||||||||||||| || |||| ||||    
T  48200383 ttaatttaaaagacttaagcggtacgaaaaaaaattaaatgatcaattctttacaattaaataagttaaaagatttctagtgtaat 48200468  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 44291105 - 44291038
Alignment:
Q  171 ttggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggtacg 238  Q
    |||||||||||| || ||||| | | ||||||||||||  |||||||||||| |||||||||||||||    
T  44291105 ttggtacggaaaaaacttaaaaggccaacttgttacaactaattaacttaaatgacttaagtggtacg 44291038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 44291413 - 44291509
Alignment:
Q  187 ttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggtacgnnnnnnntttaaatgaccaattcgttacaattaaataagttaaaa 283  Q
    ||||||||||||||||||||||| || ||||||||| ||| |||||| |||        |||| | |||||||| ||||||||||||||| ||||||    
T  44291413 ttaaaggactaacttgttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaaa 44291509  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 29756242 - 29756171
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaa 221  Q
    |||||||||||||||| | | ||||||||||||| || ||||||| | ||||| ||||||| |||||||||||    
T  29756242 ttaaataacttaaaggaccttattggtacggaaaaaacttaaagggccaactt-ttacaattaattaacttaa 29756171  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 44291429 - 44291509
Alignment:
Q  143 ttacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaa 223  Q
    ||||| |||||||||||||||| ||||| || |||  ||| |||||| ||||| || |||||||||| || ||||||||||    
T  44291429 ttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaaa 44291509  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 8198567 - 8198697
Alignment:
Q  107 acttatatttttaagatttgaaacccccctaaatcattacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttac 206  Q
    ||||| ||||||||||| ||||| |||| |||||  ||||  |||||||||||||||| | ||||||||||||||| || ||||||| | ||||| ||||    
T  8198567 acttacatttttaagatctgaaatcccc-taaattgttacggttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttattac 8198665  T
Q  207 aatcaattaacttaaaagacttaagtggtacg 238  Q
    ||| ||||| |||||| ||| |||||||||||    
T  8198666 aattaattatcttaaaggacctaagtggtacg 8198697  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 8203327 - 8203457
Alignment:
Q  107 acttatatttttaagatttgaaacccccctaaatcattacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttac 206  Q
    ||||| ||||||||||| ||||| |||| |||||  ||||  |||||||||||||||| | ||||||||||||||| || ||||||| | ||||| ||||    
T  8203327 acttacatttttaagatctgaaatcccc-taaattgttacggttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttattac 8203425  T
Q  207 aatcaattaacttaaaagacttaagtggtacg 238  Q
    ||| ||||| |||||| ||| |||||||||||    
T  8203426 aattaattatcttaaaggacctaagtggtacg 8203457  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 4558874 - 4558947
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaa 222  Q
    ||||||| |||||||| | |||||||||| || | || ||||||||  ||||||||||||| ||||||| ||||    
T  4558874 ttaaatagcttaaaggacctaattggtacagacaaaacttaaaggaacaacttgttacaattaattaacataaa 4558947  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 288
Target Start/End: Original strand, 37705051 - 37705195
Alignment:
Q  143 ttacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggtacgnnnn 242  Q
    ||||| ||||||| |||| ||| | ||||||||||| ||| |||| ||||||| ||||||||| ||| |||||||||||| ||| |||||||||||        
T  37705051 ttacagttaaatagcttagaggacctaattggtacgaaaaaaatt-aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaa 37705149  T
Q  243 nnntttaaatgaccaattcgttacaattaaataagttaaaagactt 288  Q
        ||||||||||||||  |||||| ||||||| |||||||||||    
T  37705150 aatcttaaatgaccaatttcttacaactaaataacttaaaagactt 37705195  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 13953485 - 13953571
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggta 236  Q
    |||||||||||||| | | ||||||||||||||| || ||||| ||| ||||||||||||| |||||||||||| |||||||| ||||    
T  13953485 ttaaataacttaaaagacgtaattggtacggaaa-aacttaaaagacaaacttgttacaattaattaacttaaatgacttaagcggta 13953571  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 1629837 - 1629760
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagac 226  Q
    |||||||||||||||| | |||||| |||||||| || ||||||||   | |||||||||| ||||||||||||||||    
T  1629837 ttaaataacttaaaggacttaattgctacggaaaaaacttaaaggatcgatttgttacaattaattaacttaaaagac 1629760  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 29903563 - 29903636
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaa 222  Q
    |||||||||||||| | | ||||||||| | ||| ||||||||||||||| |||||| ||| |||||| |||||    
T  29903563 ttaaataacttaaaagacttaattggtatgaaaataatttaaaggactaatttgttaaaattaattaatttaaa 29903636  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 2143379 - 2143412
Alignment:
Q  189 aaaggactaacttgttacaatcaattaacttaaa 222  Q
    ||||||||||||||||||||| ||||||||||||    
T  2143379 aaaggactaacttgttacaattaattaacttaaa 2143412  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 13953427 - 13953347
Alignment:
Q  143 ttacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaa 223  Q
    ||||| |||||||| ||||||| | ||| || |||  ||| || ||||| ||||||||||||||||| || ||||||||||    
T  13953427 ttacagttaaataatttaaaggacttaaatgttacacaaaaaacttaaaagactaacttgttacaattaaataacttaaaa 13953347  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 42474948 - 42474908
Alignment:
Q  197 aacttgttacaatcaattaacttaaaagacttaagtggtac 237  Q
    ||||| ||||||| ||||||||||||||| |||||||||||    
T  42474948 aacttattacaattaattaacttaaaagatttaagtggtac 42474908  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 17411200 - 17411299
Alignment:
Q  107 acttatatttttaagatttgaaacccccctaaatcattacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttac 206  Q
    ||||| ||||||||||| ||||| ||||| |||| |||||  |||||||||||||||  ||||||||||||||||| ||||   ||||||||||||||||    
T  17411200 acttacatttttaagatctgaaatccccc-aaattattacgattaaataacttaaagtacataattggtacggaaaaaatt--gaggactaacttgttac 17411296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 33547889 - 33547799
Alignment:
Q  143 ttacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtgg 234  Q
    ||||| |||||||||||||||| | ||| ||||| | ||| || ||||| ||| ||||||||||||| |||||||||||| ||| |||||||    
T  33547889 ttacaattaaataacttaaaggacctaaatggtatgaaaa-aacttaaaagacaaacttgttacaattaattaacttaaaggacataagtgg 33547799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 16419732 - 16419660
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaa 222  Q
    ||||||||||||||||    |||||||||| ||| || ||||| ||| ||||||||||||| ||||||||||||    
T  16419732 ttaaataacttaaaggatcaaattggtacgaaaa-aacttaaatgaccaacttgttacaattaattaacttaaa 16419660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 17411140 - 17411092
Alignment:
Q  185 atttaaaggactaacttgttacaatcaattaacttaaaagacttaagtg 233  Q
    ||||||| ||||||||||||||||| || ||||||||| ||| ||||||    
T  17411140 atttaaaagactaacttgttacaattaaataacttaaatgacgtaagtg 17411092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 32548253 - 32548301
Alignment:
Q  188 taaaggactaacttgttacaatcaattaacttaaaagacttaagtggta 236  Q
    ||||||| |||||| ||| ||| ||||||||||||||| ||||||||||    
T  32548253 taaaggattaacttattataattaattaacttaaaagatttaagtggta 32548301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 32857940 - 32858027
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggta 236  Q
    |||||||| ||||| | | ||||| |||| |||| ||||||||| || ||||| ||||||| ||||||||||||||| ||||||||||    
T  32857940 ttaaataatttaaatgacctaattagtactgaaaaaatttaaagaaccaacttattacaattaattaacttaaaagatttaagtggta 32858027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 20389783 - 20389705
Alignment:
Q  143 ttacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaa 222  Q
    ||||| ||||||||||||||||   ||||| ||||| ||| || |||||| || ||||||||||||| ||||||||||||    
T  20389783 ttacagttaaataacttaaaggatctaattcgtacgaaaaaaacttaaag-accaacttgttacaattaattaacttaaa 20389705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 21921012 - 21921098
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggta 236  Q
    |||||||||||||||| | ||||| ||||||||| || |||||  |  ||||||||||| | ||||||||| |||||| |||||||||    
T  21921012 ttaaataacttaaaggacctaattagtacggaaaaaacttaaataaacaacttgttacagttaattaactt-aaagacataagtggta 21921098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 5755685 - 5755636
Alignment:
Q  189 aaaggactaacttgttacaatcaattaacttaaaagacttaagtggtacg 238  Q
    ||||||| ||||||||||||| ||||||| |||| || ||||||||||||    
T  5755685 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg 5755636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 18128480 - 18128553
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaa 222  Q
    ||||||||||||||||   ||||| ||||| ||| || |||||| || ||||| ||||||| ||||||||||||    
T  18128480 ttaaataacttaaaggatctaattcgtacgaaaaaaaattaaagcaccaacttattacaattaattaacttaaa 18128553  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 18128330 - 18128382
Alignment:
Q  15 tcacttacatcatttaaattatctaattgtaacaaactaatcctttaagtatt 67  Q
    |||||||| || ||||| |||| ||||||| ||||| ||||||||||||||||    
T  18128330 tcacttacgtcctttaagttatttaattgtcacaaattaatcctttaagtatt 18128382  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 25112600 - 25112517
Alignment:
Q  153 ataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggta 236  Q
    |||||||||| | | ||||||||||||||| |||||||||||  ||||| ||||||| ||||| ||||||  ||||||||||||    
T  25112600 ataacttaaatgacttaattggtacggaaaaaatttaaaggatcaacttattacaattaattagcttaaataacttaagtggta 25112517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 46530296 - 46530210
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggt 235  Q
    |||||||||||||||    ||||| ||| ||||| || ||||||| | ||||||||||||| |||||||||||||||| ||||||||    
T  46530296 ttaaataacttaaagaatctaattagtatggaaaaaacttaaagggcaaacttgttacaattaattaacttaaaagacctaagtggt 46530210  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 47600619 - 47600685
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaatta 215  Q
    |||||||||||||| | |  ||||||||||| || || ||||||||||||||||||||||| |||||    
T  47600619 ttaaataacttaaatgaccaaattggtacggtaaaaacttaaaggactaacttgttacaattaatta 47600685  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 16554396 - 16554303
Alignment:
Q  190 aaggactaacttgttacaatcaattaacttaaaagacttaagtggtacgnnnnnnntttaaatgaccaattcgttacaattaaataagttaaaa 283  Q
    |||||| |||||||||||||  ||||||||||| ||||||||||||||         ||||| ||||||||  |||||||||||||| ||||||    
T  16554396 aaggaccaacttgttacaattgattaacttaaatgacttaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 16554303  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 16026188 - 16026108
Alignment:
Q  142 attacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaa 222  Q
    |||||| |||||||||||||||| | |||  |||||| ||| ||| |||| || |||||| ||||||| || |||||||||    
T  16026188 attacagttaaataacttaaaggacctaagaggtacgaaaaaaatgtaaatgattaacttattacaattaaataacttaaa 16026108  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 48673457 - 48673381
Alignment:
Q  148 tttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaag 224  Q
    ||||||||||||||||| | ||| || || | ||| |||||||| ||| ||||||||| ||| || |||||||||||    
T  48673457 tttaaataacttaaaggacgtaactgatatgaaaataatttaaatgaccaacttgttataattaaataacttaaaag 48673381  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 37064652 - 37064737
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggt 235  Q
    |||||||||||||| | |||||||| ||  |||| || ||||||||| ||||||||| ||| |||||||||||| ||||||||||||    
T  37064652 ttaaataacttaaatgacataattgatattgaaa-aacttaaaggaccaacttgttataattaattaacttaaaggacttaagtggt 37064737  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 27533147 - 27533230
Alignment:
Q  137 aaatcattacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaactta 220  Q
    |||| |||||| |||||||||||||| | | ||||||||||  ||| || ||||| | | |||||||||||||||||| |||||    
T  27533147 aaattattacagttaaataacttaaatgacctaattggtacaaaaaaaacttaaaaggccaacttgttacaatcaatttactta 27533230  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 15175040 - 15174998
Alignment:
Q  184 aatttaaaggactaacttgttacaatcaattaacttaaaagac 226  Q
    |||||||||||||||||||||| |||||  |||||||||||||    
T  15175040 aatttaaaggactaacttgttataatcatataacttaaaagac 15174998  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 3806998 - 3807043
Alignment:
Q  187 ttaaaggactaacttgttacaatcaattaacttaaaagacttaagt 232  Q
    |||||| |||||||||||| ||| |||||||||||||||| |||||    
T  3806998 ttaaagtactaacttgttaaaattaattaacttaaaagacataagt 3807043  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 2277210 - 2277250
Alignment:
Q  197 aacttgttacaatcaattaacttaaaagacttaagtggtac 237  Q
    ||||||||||||| |||||||||||| ||| ||||||||||    
T  2277210 aacttgttacaattaattaacttaaaggacctaagtggtac 2277250  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 22519772 - 22519858
Alignment:
Q  152 aataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggtacg 238  Q
    ||||||||||| | | |||||| ||| |||| || ||||||||  ||||||||| ||| |||||||||||||||| |||||||||||    
T  22519772 aataacttaaatgacctaattgatacagaaaaaacttaaaggatcaacttgttataattaattaacttaaaagacctaagtggtacg 22519858  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 22889719 - 22889646
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaa 222  Q
    |||||| ||||||| | | ||||||||||||||| ||||||| | || |||||||||||||  |||||||||||    
T  22889719 ttaaattacttaaatgacttaattggtacggaaaaaatttaatgaaccaacttgttacaatttattaacttaaa 22889646  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 22941383 - 22941310
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaa 222  Q
    |||||| ||||||| | | ||||||||||||||| ||||||| | || |||||||||||||  |||||||||||    
T  22941383 ttaaattacttaaatgacttaattggtacggaaaaaatttaatgaaccaacttgttacaatttattaacttaaa 22941310  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 33617860 - 33617949
Alignment:
Q  149 ttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggtacg 238  Q
    |||||||||||||||| |||||||| || | ||| || |||||||| | |||| ||||| | |||||||||||| ||| |||| ||||||    
T  33617860 ttaaataacttaaaggacataattgatatgaaaaaaacttaaaggattgacttattacacttaattaacttaaaggacctaagcggtacg 33617949  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 42676843 - 42676883
Alignment:
Q  188 taaaggactaacttgttacaatcaattaacttaaaagactt 228  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  42676843 taaaggattaacttgttacaattaattaacttaaaagactt 42676883  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 23183874 - 23183801
Alignment:
Q  107 acttatatttttaagatttgaaacccccctaaatcattacatttaaataacttaaagggcataattggtacggaaa 182  Q
    ||||||||||||||||||||||| || || ||||  |||| ||||||||||||||| | | |||||||||||||||    
T  23183874 acttatatttttaagatttgaaatcctcc-aaattgttacttttaaataacttaaa-gacctaattggtacggaaa 23183801  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 22519447 - 22519381
Alignment:
Q  143 ttacatttaaataacttaaagggcataattggtacggaaagaatttaaaggactaacttgttacaat 209  Q
    ||||| |||||||||||||||| | ||| || |||| |||  | |||||||||||||||||||||||    
T  22519447 ttacaattaaataacttaaaggacctaagtgttacgaaaaatacttaaaggactaacttgttacaat 22519381  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 31095272 - 31095332
Alignment:
Q  178 ggaaagaatttaaaggactaacttgttacaatcaattaacttaaaagacttaagtggtacg 238  Q
    ||||| || ||| |||| |||||||||||||  |||||||||||||||| ||| |||||||    
T  31095272 ggaaaaaacttataggattaacttgttacaactaattaacttaaaagacctaaatggtacg 31095332  T

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Target: scaffold0591 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 3870 - 3923
Alignment:
Q  168 taattggtacggaaagaatttaaaggactaacttgttacaatcaattaacttaaa 222  Q
    ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||    
T  3870 taattggtacgaaaa-aacttaaaggaccaacttgttacaatcaattaacttaaa 3923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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