View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8725_low_2 (Length: 409)
Name: NF8725_low_2
Description: NF8725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8725_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 6 - 393
Target Start/End: Original strand, 21598972 - 21599359
Alignment:
| Q |
6 |
gtttggtggtaatgaggatttgactctgatatagtatttgttggccaactgtctatttgtttcttcctactatttttactttgtctgcagattgtatttt |
105 |
Q |
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| T |
21598972 |
gtttggtggtaatgaggatttgactctgatatagtatttgttggccgactgtctatttgtttcttcctactatttttactttgtctgcagattgtatttt |
21599071 |
T |
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| Q |
106 |
ttggattagtttatcttttaagtcactttaccttcatttccacagattatgattatactcaagatttttgaagattaaccttgttattcttgatacaggt |
205 |
Q |
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| T |
21599072 |
ttggattagtttatcttttaagtcactttaccttcatttccacagattatgattatactcaagatttttgaagattaaccttgttattcttgatacaggt |
21599171 |
T |
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| Q |
206 |
ttaccaattgttgctactttcattctttttctttttctatcatctctaaaatggcatagattttataacagaaaatcaagtcaattaagttttgctattt |
305 |
Q |
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| T |
21599172 |
ttaccaattgttgctactttcattctttttctttttctatcatctctaaaatggcatagattttataacagaaaatcaagtcaattaagttttgttattt |
21599271 |
T |
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| Q |
306 |
gctccaaaaaacttgaannnnnnnagtttggtaaaattttgagtgttgaagatatggcacttactgtatactttaaatacattgtaac |
393 |
Q |
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| T |
21599272 |
gctccaaaaaacttgaatttttttagtttggtaaaattttgagtgttgaagatatggcacttactgtatactttaaatacattgtaac |
21599359 |
T |
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