View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8725_low_6 (Length: 252)
Name: NF8725_low_6
Description: NF8725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8725_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 9887198 - 9887424
Alignment:
| Q |
18 |
gaagagtctcacattttatgaaaaataaacgtttattgtaggttttagattgagtactcatagtacacttcttttccgttgaacatgtttgtgaaaatcc |
117 |
Q |
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| T |
9887198 |
gaagagtctcacatttcatgaaaaataaacgtttatttcaggttttagattgagtactcatagtacacttcttttccgttgaacatgtttgtgaaaatct |
9887297 |
T |
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| Q |
118 |
catccaagcttcattattgccaccagtgtataagatgggtaatcacatctctgccacaaaaacatgtcaatttatcactataaaatttcccaaatccaaa |
217 |
Q |
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| T |
9887298 |
catccaaacttcattattgc-actagtgtataagatgggtaatcacatctctgccacaaaaacatgtcaatttatcactataaaatttcccaaatccaaa |
9887396 |
T |
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| Q |
218 |
agttgtgcagttggattattctctgctt |
245 |
Q |
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| T |
9887397 |
agttgtgcagttggattattctctgctt |
9887424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 9884394 - 9884170
Alignment:
| Q |
18 |
gaagagtctcacattttatgaaaaataaacgtttattgtaggttttagattgagtactcatagtacacttcttttccgttgaacatgtttgtgaaaatcc |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| | |
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| T |
9884394 |
gaagagtctcacatttcatgaaaaataaacgtttattgcaggttttagattgattactcatagtacacttctttttcattgaacatgtttgtgaaaatac |
9884295 |
T |
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| Q |
118 |
catccaagcttcattattgccaccagtgtataagatgggtaatcacatctctgccacaaaaacatgtcaatttatcactataaaatttcccaaatccaaa |
217 |
Q |
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| T |
9884294 |
catccaagcttcattattgtcaccagtgtataaaatcggtaatcataactttgccacaaaaacatgtcaacttatcactataaaatttcccgaatcgtaa |
9884195 |
T |
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| Q |
218 |
agttgtgcagttggattattctctg |
242 |
Q |
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| T |
9884194 |
agttgtgcagttggattattctctg |
9884170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 9886989 - 9887140
Alignment:
| Q |
87 |
tcttttccgttgaacatgtttgtgaaaatcccatccaagcttcattattgccaccagtgtataagatgggtaatcacatctctgccacaaaaacatgtca |
186 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9886989 |
tcttttccgttgaacatgtttgtgaaaatctcatccaaacttcattattgc-actagtgtataagatgggtaatcacatctctgccacaaaaacatgtca |
9887087 |
T |
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| Q |
187 |
atttatcactataaaatttcccaaatccaaaagttgtgcagttggattattct |
239 |
Q |
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| T |
9887088 |
atttatcactataaaatttcccaaatccaaaagttgtgcagttggattattct |
9887140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 6141020 - 6141141
Alignment:
| Q |
18 |
gaagagtctcacattttatgaaaaataaacgtttattgtaggttttagattgagtac---tcatagtacacttcttttccgttgaacatgtttgtgaaaa |
114 |
Q |
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|||||||||||||||| |||||||||||||||| |||| ||||||| |||||||||| |||| ||||||||||||| ||||||||| ||||||||||| |
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| T |
6141020 |
gaagagtctcacatttcatgaaaaataaacgttcattgcaggtttttgattgagtacgactcatggtacacttctttttcgttgaacacgtttgtgaaaa |
6141119 |
T |
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| Q |
115 |
tcccatccaagcttcattattg |
136 |
Q |
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|| ||||||||||||||||||| |
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| T |
6141120 |
tcgcatccaagcttcattattg |
6141141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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