View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8725_low_7 (Length: 247)
Name: NF8725_low_7
Description: NF8725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8725_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 56313751 - 56313529
Alignment:
| Q |
9 |
atattgtactaggtgcctaggttgatgctgctgctgc---atcatcatcaatccttcttcctcttctgaacggtaattagtaggaggaggagtattgcta |
105 |
Q |
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| T |
56313751 |
atattgtactaggtgcctaggttgatgctgctgctgctgcataatcatcaatccttcttcttcttctgaacggtaattagtaggaggaggagtattgcta |
56313652 |
T |
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| Q |
106 |
tacttggaaagcccaagagttgttgtgacatgatctgaattaccgccgctactgcttccttccattttgttaactatgtgatcatcaattgtctttggtg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56313651 |
tacttggaaagcccaagagttgttgtgacatgatctgaattaccgccgctactgcttccttccattttgttaactatgtgatcatcaattgtctttggtg |
56313552 |
T |
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| Q |
206 |
attgtccaacaacaaatcccatt |
228 |
Q |
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||||||||||||||||||||||| |
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| T |
56313551 |
attgtccaacaacaaatcccatt |
56313529 |
T |
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