View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8726_1 (Length: 345)

Name: NF8726_1
Description: NF8726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8726_1
NF8726_1
[»] chr3 (5 HSPs)
chr3 (1-281)||(36502478-36502759)
chr3 (285-335)||(36502394-36502444)
chr3 (285-317)||(18387634-18387666)
chr3 (273-317)||(25081574-25081618)
chr3 (285-317)||(55296506-55296538)
[»] chr7 (2 HSPs)
chr7 (286-335)||(15893848-15893897)
chr7 (285-335)||(3772585-3772635)
[»] chr4 (1 HSPs)
chr4 (285-329)||(46578256-46578300)
[»] chr6 (2 HSPs)
chr6 (285-317)||(25530888-25530920)
chr6 (285-317)||(33326680-33326712)
[»] chr5 (2 HSPs)
chr5 (285-317)||(12421456-12421488)
chr5 (285-317)||(13599953-13599985)
[»] chr1 (1 HSPs)
chr1 (285-317)||(36682294-36682326)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 36502759 - 36502478
Alignment:
Q  1 aaaaccataaataaaataagattgctgtgcacgttcactcaaatttacactttaaattctagttttcaaaacaagaaacatgatatacatccaaaatagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36502759 aaaaccataaataaaataagattgctgtgcacgttcactcaaatttacactttaaattctagttttcaaaacaagaaacaagatatacatccaaaatagg 36502660  T
Q  101 aagatttcttttcaaaattataatagcttaatagaaatggtacagagtttcacaacacagtacatagaccagaataaaaattactaattaatctaaggct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36502659 aagatttcttttcaaaattataatagcttaatagaaatggtacagagtttcacaacacagtacatagaccagaataaaaattactaattaatctaaggct 36502560  T
Q  201 aagctaatttatcatgattaca-aagaagaaaatttacattcagtttaaatcacagccatacagaatttcaagtgtgtgtgt 281  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36502559 aagctaatttatcatgattacagaagaagaaaatttacattcagtttaaatcacagccatacagaatttcaagtgtgtgtgt 36502478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 36502444 - 36502394
Alignment:
Q  285 tatatatatacagggcatatcaaatgagaggaggtttattgtgagtgatga 335  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||| |||||    
T  36502444 tatatatatatagggcatatcaagtgagaggagttttattgtgagagatga 36502394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 18387634 - 18387666
Alignment:
Q  285 tatatatatacagggcatatcaaatgagaggag 317  Q
    |||||||||| ||||||||||||||||||||||    
T  18387634 tatatatatatagggcatatcaaatgagaggag 18387666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 25081618 - 25081574
Alignment:
Q  273 tgtgtgtgtctctatatatatacagggcatatcaaatgagaggag 317  Q
    ||||||||| | |||||||||| |||||||||||| |||||||||    
T  25081618 tgtgtgtgtgtatatatatatatagggcatatcaagtgagaggag 25081574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 55296506 - 55296538
Alignment:
Q  285 tatatatatacagggcatatcaaatgagaggag 317  Q
    |||||||||| ||||||||||||||||||||||    
T  55296506 tatatatatatagggcatatcaaatgagaggag 55296538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 15893848 - 15893897
Alignment:
Q  286 atatatatacagggcatatcaaatgagaggaggtttattgtgagtgatga 335  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||| |||||    
T  15893848 atatatatacaggacatatcaaatgagatgagttttattgtgagagatga 15893897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 3772585 - 3772635
Alignment:
Q  285 tatatatatacagggcatatcaaatgagaggaggtttattgtgagtgatga 335  Q
    |||||||||| ||||||||||||||||||||   ||||||||||| |||||    
T  3772585 tatatatatagagggcatatcaaatgagaggttttttattgtgagagatga 3772635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 46578300 - 46578256
Alignment:
Q  285 tatatatatacagggcatatcaaatgagaggaggtttattgtgag 329  Q
    |||||||||| ||||||| |||||||||||||| |||||||||||    
T  46578300 tatatatatatagggcatttcaaatgagaggagttttattgtgag 46578256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 25530888 - 25530920
Alignment:
Q  285 tatatatatacagggcatatcaaatgagaggag 317  Q
    |||||||||| ||||||||||||||||||||||    
T  25530888 tatatatatatagggcatatcaaatgagaggag 25530920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 33326712 - 33326680
Alignment:
Q  285 tatatatatacagggcatatcaaatgagaggag 317  Q
    |||||||||| ||||||||||||||||||||||    
T  33326712 tatatatatatagggcatatcaaatgagaggag 33326680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 12421488 - 12421456
Alignment:
Q  285 tatatatatacagggcatatcaaatgagaggag 317  Q
    |||||||||| ||||||||||||||||||||||    
T  12421488 tatatatatatagggcatatcaaatgagaggag 12421456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 13599985 - 13599953
Alignment:
Q  285 tatatatatacagggcatatcaaatgagaggag 317  Q
    |||||||||| ||||||||||||||||||||||    
T  13599985 tatatatatatagggcatatcaaatgagaggag 13599953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 36682326 - 36682294
Alignment:
Q  285 tatatatatacagggcatatcaaatgagaggag 317  Q
    |||||||||| ||||||||||||||||||||||    
T  36682326 tatatatatatagggcatatcaaatgagaggag 36682294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University