View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8726_low_1 (Length: 252)
Name: NF8726_low_1
Description: NF8726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8726_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 107005 - 106851
Alignment:
| Q |
83 |
agtgtttgtgttataaagatcaaaagagaagagaatgaattacttgggtcgcgagcggtggctttaacagtgtaaccacgatggagaaggtaacgaacga |
182 |
Q |
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| T |
107005 |
agtgtttgtgttataaagatcaaaagagaagagaatgaattacttgggtcgcgaacggtggctttaacagtgtaaccacgatggagaaggtaacgaacga |
106906 |
T |
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| Q |
183 |
gccatgaagctatgtaacctgaagctccagttacacacacaacgttgctgttcat |
237 |
Q |
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| T |
106905 |
gccatgaagctatgtaacctgaagctccagttacacacacaacgttgctgttcat |
106851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 87595 - 87493
Alignment:
| Q |
123 |
tacttgggtcgcgagcggtggctttaacagtgtaaccacgatggagaaggtaacgaacgagccatgaagctatgtaacctgaagctccagttacacacac |
222 |
Q |
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| T |
87595 |
tacttggatcgcgaacggtggctttaacagtgtagccacgatgaagaagcaatcggacgagccatgaagcgatgtaacctgaagcgccagtcacacacac |
87496 |
T |
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| Q |
223 |
aac |
225 |
Q |
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||| |
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| T |
87495 |
aac |
87493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 107120 - 107051
Alignment:
| Q |
18 |
caaaacttatgaagcacggacgtagacgcagacacattaactttaaacaatgacttaattaattcagtgt |
87 |
Q |
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|||||| ||||||||||| || ||||| || ||||||||||||||||||||||||||||||||| ||||| |
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| T |
107120 |
caaaacgtatgaagcacgaacatagacacatacacattaactttaaacaatgacttaattaattaagtgt |
107051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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