View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_high_11 (Length: 260)
Name: NF8727_high_11
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5969418 - 5969503
Alignment:
| Q |
1 |
actatgaataatcgcataaaattttgtaatgttctattacgatgtttgtatatggttgtagtttctggaaaaagaataatagagag |
86 |
Q |
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| T |
5969418 |
actatgaataatcgcataaaattttgtaatgttctattatgatgtttgtatatggttgtagtttctggaaaaagaataatagagag |
5969503 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 5969600 - 5969674
Alignment:
| Q |
175 |
aatctaaggagaaattgtattaagagagtggcaatgtgaaattgttttatgaatgaatgtgccaatgtgtgatct |
249 |
Q |
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| T |
5969600 |
aatctaaggagaaattgtattaagagagtggcaatgtgaaattgttttatgaatgaatgtgccaatgtgtgatct |
5969674 |
T |
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