View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8727_high_16 (Length: 240)
Name: NF8727_high_16
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9712800 - 9713022
Alignment:
| Q |
1 |
attttatttcgaagtacgcgtgttacttacatatagaggctatgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9712800 |
attttatttcgaagtacgcgtgttacttacatatagaggctatgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaaca |
9712899 |
T |
|
| Q |
101 |
gtttcttgtctatgtcccaaacctaaatgtgaaatgataaattaatgaatgataatgattttaatgaaatatcaacaatgtgattctatgtcccagattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9712900 |
gtttcttgtctatgtcccaaacctaaatgtgaaatgataaattaatgaatgataatgattttaatgaaatatcaacaatgtaattctatgtcccagattc |
9712999 |
T |
|
| Q |
201 |
ttggtctttgtataacaaatttg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9713000 |
ttggtctttgtataacaaatttg |
9713022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 9724493 - 9724586
Alignment:
| Q |
43 |
tgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctg----acaacagtttcttgtctatgtcccaaacctaaatgtga |
132 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||||||| |||||| | | |||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
9724493 |
tgctgaatgtttgcaagagaagtgatttcttctttaacaatatacaagccagtcacacaacaatttcttgtctatgtcccaaacctatatgtga |
9724586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 31106309 - 31106202
Alignment:
| Q |
24 |
tacttacatatagaggctatgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaacagtttcttgtctatgtcccaaacc |
123 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| ||| || | || ||||| | |||||| ||||||||||||||| |
|
|
| T |
31106309 |
tacttacatatacaggctatgttgaatgactgcaaaacaagtgatttcttctttagcaacatatacatcagacaatattttcttctctatgtcccaaacc |
31106210 |
T |
|
| Q |
124 |
taaatgtg |
131 |
Q |
| |
|
|||||||| |
|
|
| T |
31106209 |
taaatgtg |
31106202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University