View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8727_high_17 (Length: 239)
Name: NF8727_high_17
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_high_17 |
 | |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15884829 - 15884607
Alignment:
| Q |
1 |
aaaattttaggcctagaagcaaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagtt |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15884829 |
aaaattttaggcctagatgcaaatattacatcatgggttttaagtacctccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagtt |
15884730 |
T |
|
| Q |
101 |
gtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcct |
200 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||||||||||||||||||| | |
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| T |
15884729 |
gtagttgcattaagggtccatgtattttggccaagtctcttaatttttgatgtggtgtagaggtaactagatgatgtatgtgtcctataataggtagctt |
15884630 |
T |
|
| Q |
201 |
ccatggtcctggaggtaggtttg |
223 |
Q |
| |
|
|||||||||||| |||||||||| |
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|
| T |
15884629 |
ccatggtcctgggggtaggtttg |
15884607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 12638221 - 12638441
Alignment:
| Q |
3 |
aattttaggcctagaagcaaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgt |
102 |
Q |
| |
|
|||||||||| |||| |||||||| | |||||| ||||| | ||| ||| ||||||| |||||||||||||||||||| ||| |||||||||| |||||| |
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|
| T |
12638221 |
aattttaggcttagatgcaaatatgatatcatgagttttcattacctccctagcatactctggtgaggaaacaacaattgcagagatctctccaagttgt |
12638320 |
T |
|
| Q |
103 |
agttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctcc |
202 |
Q |
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| |||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
12638321 |
aagtgcatcaagggtccatacactttggccaaatctcttaatttttgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggcagcttcc |
12638420 |
T |
|
| Q |
203 |
atggtcctggaggtaggtttg |
223 |
Q |
| |
|
|||||||||| ||||| |||| |
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|
| T |
12638421 |
atggtcctgggggtagatttg |
12638441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 12611224 - 12611441
Alignment:
| Q |
6 |
tttaggcctagaagcaaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagt |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||| || ||||||||||| ||| |||||||||| |||||||| |
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|
| T |
12611224 |
tttaggcctagatgcaaatattacatcatgggttttaagtacctccctagcatactctggcgatgaaacaacaattgcagagatctctccaagttgtagg |
12611323 |
T |
|
| Q |
106 |
tgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctccatg |
205 |
Q |
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|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | ||| | ||| |||||| |||||||||||||| | |||||| |
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|
| T |
12611324 |
tgcatcaagggtccataaattttcgccaagtctcttaattttcgatgtggtgtagaagtaactaaatgatgtatgcttcctataataggtaacttccatg |
12611423 |
T |
|
| Q |
206 |
gtcctggaggtaggtttg |
223 |
Q |
| |
|
||||||| ||||| |||| |
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|
| T |
12611424 |
gtcctggtggtagctttg |
12611441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 63358 - 63574
Alignment:
| Q |
7 |
ttaggcctagaagcaaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagtt |
106 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||| || ||| ||||||| |||||||||||||||||||| ||| |||||||||| |||||||| | |
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|
| T |
63358 |
ttaggcctagatgcaaatttgacatcatgggttttaaatatctccctagcatactctggtgaggaaacaacaattgcagagatctctccaagttgtagct |
63457 |
T |
|
| Q |
107 |
gcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctccatgg |
206 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| || |||||||||||||| ||||| | || ||||| ||||||||||| |||||||||||| ||||||| |
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|
| T |
63458 |
gcatcaaggatccatgtgttttggccaagtcactcaattttcgatgtggggtagatgtaagtagatgatgtatgtgtccaataataggtagcttccatgg |
63557 |
T |
|
| Q |
207 |
tcctggaggtaggtttg |
223 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
63558 |
tcctggaggtaggtttg |
63574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 22947673 - 22947869
Alignment:
| Q |
21 |
aaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtcca |
120 |
Q |
| |
|
||||||||||||||| ||||| | || |||| ||||||| |||| ||||||||||| |||| ||||| || || ||||| || ||||| || || ||| |
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|
| T |
22947673 |
aaatattacatcatgagttttcattatttccatagcatattctgctgaggaaacaataatgaaaaagacttcaccaagttgaagatgcattaaagggcca |
22947772 |
T |
|
| Q |
121 |
tgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctccatggtcctggaggta |
217 |
Q |
| |
|
| | | || | ||| ||||||||||||| |||||||| |||| || ||||| ||||||| |||||| || |||||| ||||||| ||||| |||| |
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|
| T |
22947773 |
tatttatttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttcctatgattggtagcttccatggccctggtggta |
22947869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 22987445 - 22987532
Alignment:
| Q |
61 |
tctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttc |
148 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || |||||||| |||||||||||||||| | |||| || || ||||||||||||| |
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|
| T |
22987445 |
tctggtgaggaaacaacaatgaaaaatatctcaccaagttgtagatgcatcaagggtccatatttttttgctaaatctcttaattttc |
22987532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 23018544 - 23018651
Alignment:
| Q |
91 |
tctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataa |
190 |
Q |
| |
|
||||| ||||| || |||||||||||||||| | ||||||||||||| |||||||||| ||| ||| |||| | ||||| |||||| | |||||||| |
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|
| T |
23018544 |
tctccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataa |
23018643 |
T |
|
| Q |
191 |
taggtagc |
198 |
Q |
| |
|
|||||||| |
|
|
| T |
23018644 |
taggtagc |
23018651 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 23040334 - 23040440
Alignment:
| Q |
90 |
ctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctata |
189 |
Q |
| |
|
|||||| ||||| || ||||||| |||||||| | |||||||||||||||||| ||||||||| ||| ||||| | |||| |||||| | ||||||| |
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|
| T |
23040334 |
ctctccaagttgaagatgcatcaggggtccatattttttggccaagtctcttagttttcgatggggttgagaggttaacagattgtgtatatttcctata |
23040433 |
T |
|
| Q |
190 |
ataggta |
196 |
Q |
| |
|
||||||| |
|
|
| T |
23040434 |
ataggta |
23040440 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 22997676 - 22997732
Alignment:
| Q |
20 |
caaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaa |
76 |
Q |
| |
|
||||||| |||||||| ||||| | || |||||||||||| |||| ||||||||||| |
|
|
| T |
22997676 |
caaatataacatcatgagttttcattatttccttagcatattctgctgaggaaacaa |
22997732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 23025558 - 23025626
Alignment:
| Q |
88 |
atctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggt |
156 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||| | | | |||||||||| || ||||||||||||| |
|
|
| T |
23025558 |
atctctccaagttggagatgcatcaagggtccatattctcttgccaagtctcgtagttttcgatgtggt |
23025626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 23037457 - 23037513
Alignment:
| Q |
90 |
ctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattt |
146 |
Q |
| |
|
|||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
23037457 |
ctctccaagttgaagatgcatcactggtccatattttttggccaagtctcttaattt |
23037513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 23611510 - 23611666
Alignment:
| Q |
61 |
tctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtag |
160 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| || ||||| || |||||||||||||||| | ||||||| || ||||||||| ||| | ||||| | | |
|
|
| T |
23611510 |
tctggtgaagaaataacaatgaaaaagatctcaccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaatcttctaggtggttttg |
23611609 |
T |
|
| Q |
161 |
aggaaacaagatggtgtatgtgtcctataataggtagcctccatggtcctggaggta |
217 |
Q |
| |
|
| |||||||||| | || | ||||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
23611610 |
ttgcaacaagatggagaatatttcctaaaatgggtagtttccatggccctggaggta |
23611666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 14307626 - 14307706
Alignment:
| Q |
64 |
ggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaat |
144 |
Q |
| |
|
||||| |||| ||||||| ||||||||| || ||||| || |||||||||||||||| | ||||||| || ||||||||| |
|
|
| T |
14307626 |
ggtgaagaaataacaatgaaaaagatctcaccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaat |
14307706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 21781224 - 21781285
Alignment:
| Q |
90 |
ctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgat |
151 |
Q |
| |
|
|||||| ||||| || ||||||| ||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
21781224 |
ctctccaagttgaagatgcatcactggtccatattttttggccaagtctcttaatcttcgat |
21781285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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