View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_high_19 (Length: 227)
Name: NF8727_high_19
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 9871251 - 9871449
Alignment:
| Q |
15 |
cagagataagttgttttattgaagagctttctatgattgtgatagttaaaccttctggagaaaatcttgaagctgctcacatccctattaagcctttcct |
114 |
Q |
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| T |
9871251 |
cagagataagttgttttattgaagagctttctatgattgtgatagttaaaccttctggagaaaatcttgaagctgctcacatccctattaagcctttcct |
9871350 |
T |
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| Q |
115 |
ctctatatgttatttggttctacaagttcttggtatattttc-ttaatttaaatcttaatttcattattattgttcaaattttgatgtgagtaacatct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9871351 |
ctctatatgttatttggttctacaagttcttggtatgttttctttacttcaaatcttaatttcattattattgttcaaattttgatgtgagtaacatct |
9871449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 9876897 - 9877031
Alignment:
| Q |
15 |
cagagataagttgttttattgaagagctttctatgattgtgatagttaaaccttctggagaaaatcttgaagctgctcacatccctattaagcctttcct |
114 |
Q |
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||||||||||||||||||||||||| ||||||||| | || ||||||||||| ||| |||||| | |||||||||||| || || | ||||||||| || |
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| T |
9876897 |
cagagataagttgttttattgaagaactttctatggtggtaatagttaaaccaactgaagaaaaccatgaagctgctcatatacccactaagccttttct |
9876996 |
T |
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| Q |
115 |
ctctatatgttatttggttctacaagttcttggta |
149 |
Q |
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| T |
9876997 |
ctctatatgttattcagttctgcatgttcttggta |
9877031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 41037062 - 41037018
Alignment:
| Q |
104 |
aagcctttcctctctatatgttatttggttctacaagttcttggt |
148 |
Q |
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||||||||||| ||| ||||||| |||||||||||||||||||| |
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| T |
41037062 |
aagcctttcctatctttatgttacatggttctacaagttcttggt |
41037018 |
T |
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