View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8727_high_5 (Length: 473)
Name: NF8727_high_5
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 5 - 457
Target Start/End: Original strand, 9882371 - 9882823
Alignment:
| Q |
5 |
tgaatggtctcgaatattgcaaggctgtcataaatcagaaggcgaggtggagagttcttgacggtgtgaaacttaagttcccggaactacctgcaatgca |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9882371 |
tgaatggtctcggatattgcaaggctgtcataaatcagaaggcgaggtggagagttcttgacggtgtgaaacttaagttcccggaactacctgcaatgca |
9882470 |
T |
|
| Q |
105 |
acaaaataaatcgatgagagacaaaactttctccgcgagcagcaggaacacaaaagctaagtcagggaactatctacaaggaaataacgggtatagagat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9882471 |
acaaaataaatcgatgagagacaaaactttttctgcgagcagcaggaacacaaaagctaagtcagggaactatctacaaggaaataacgggtatagagat |
9882570 |
T |
|
| Q |
205 |
ataggctatgtcacgaagacactcaaaatccggagaaggaggacgaggagaattagaatatgcaattctacccacttgtgggaatggctactacatcctc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9882571 |
ataggctatgtcacgaagacactcaaaatccggagaaggaggacgaggagaattagaatatgcaattctacccacttgtgggaatggctactacatcctc |
9882670 |
T |
|
| Q |
305 |
agggctagctgaactaacagcttaaatatctaaatttcaacacacactcagttccacaaatttgagcccataaaagaaaccaaggcaacaagagactaaa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9882671 |
agggctagctgaactaacagcttaaatatctaaatttcaacacacactcagttccacaaatttgagcccataaaagaaaccaaggcaacaagagactaaa |
9882770 |
T |
|
| Q |
405 |
cattaatatccaacatactctcatgctattgtaaggtaaaagatgcattgaac |
457 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9882771 |
cattaatatccaacatactctcatgcaattgtaaggtaaaagatgcattgaac |
9882823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Complemental strand, 20424097 - 20423650
Alignment:
| Q |
18 |
atattgcaaggctgtcataaatcagaaggcgaggtggagagttcttgacggtgtgaaacttaagttcccggaactacctgcaa-------tgcaacaaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
20424097 |
atattgcaaggctgtcataaatcagaaggcgaggtggagagttcttgacggtgcgaaacttaagttcccggaaatacctgcaaactgcaatgcaacaaaa |
20423998 |
T |
|
| Q |
111 |
taaatcgatgagagacaaaactttctccgcgagcagcaggaacacaaaagctaagtcagggaactatctacaaggaaataacgggtatagagatataggc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20423997 |
taaatcgatgagagacaaaactttctccgcgagcagcagcaacacgaaagctaagtcagggaactatctacaaggaaataacgggtatagagatataggc |
20423898 |
T |
|
| Q |
211 |
tatgtcacgaagacactcaaaatccggagaaggaggacgaggagaattagaatatgcaattctacccacttgtgggaatggctactacatcctcagggct |
310 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20423897 |
tatgtcatgaagacactcaaaatccggagaaggaggaggaggagaattagaatatgcaattctacccacttgtgggaatggctactacatcctaagggct |
20423798 |
T |
|
| Q |
311 |
agctgaactaacagcttaaatatctaaatttcaacacacactcagttccacaaatttgagcccataaaagaaaccaaggcaacaagagactaaacattaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20423797 |
agctgaactaacagcttaaatatctaaatttcaacactcactcagttccacaaatttgagcccataaaagaaaccaaggcaacaagagactaaacattaa |
20423698 |
T |
|
| Q |
411 |
tatccaa-catactctcatgctattgtaaggtaaaagatgcattgaac |
457 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20423697 |
tatccaaccatactctcatgcaattgtaaggtaaaagatgcattgaac |
20423650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University