View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8727_high_6 (Length: 425)

Name: NF8727_high_6
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8727_high_6
NF8727_high_6
[»] chr7 (28 HSPs)
chr7 (20-290)||(37182933-37183206)
chr7 (288-408)||(8215676-8215796)
chr7 (288-408)||(26015624-26015744)
chr7 (288-408)||(47065698-47065818)
chr7 (288-405)||(32541944-32542061)
chr7 (288-408)||(7900635-7900755)
chr7 (288-408)||(27325157-27325277)
chr7 (288-408)||(34591878-34591998)
chr7 (288-408)||(40705271-40705391)
chr7 (288-408)||(43246715-43246835)
chr7 (288-408)||(46321804-46321924)
chr7 (288-408)||(40995389-40995509)
chr7 (288-408)||(46924080-46924199)
chr7 (288-408)||(40994571-40994691)
chr7 (288-405)||(32662150-32662267)
chr7 (299-408)||(35924318-35924427)
chr7 (288-394)||(8203211-8203319)
chr7 (288-398)||(25876978-25877090)
chr7 (288-398)||(47779274-47779387)
chr7 (288-398)||(21278835-21278947)
chr7 (288-370)||(7791106-7791188)
chr7 (288-346)||(38875874-38875932)
chr7 (288-343)||(38283414-38283469)
chr7 (49-238)||(37085276-37085466)
chr7 (289-359)||(48642094-48642164)
chr7 (288-353)||(25765045-25765110)
chr7 (48-129)||(37076444-37076525)
chr7 (138-186)||(37076358-37076406)
[»] scaffold0391 (1 HSPs)
scaffold0391 (288-408)||(4077-4197)
[»] chr8 (21 HSPs)
chr8 (288-408)||(23357018-23357138)
chr8 (288-405)||(26122290-26122407)
chr8 (288-408)||(8376442-8376562)
chr8 (288-408)||(24822485-24822605)
chr8 (288-405)||(35605539-35605656)
chr8 (288-408)||(34564790-34564910)
chr8 (288-408)||(42512361-42512481)
chr8 (288-403)||(26290545-26290660)
chr8 (288-403)||(26303802-26303917)
chr8 (288-403)||(26337157-26337272)
chr8 (288-403)||(43664092-43664207)
chr8 (288-408)||(39365448-39365567)
chr8 (288-359)||(3032708-3032779)
chr8 (288-359)||(5988390-5988461)
chr8 (288-359)||(3137035-3137106)
chr8 (288-347)||(8656756-8656815)
chr8 (288-343)||(17122292-17122347)
chr8 (288-339)||(34917740-34917791)
chr8 (289-367)||(2828154-2828232)
chr8 (289-355)||(7969872-7969938)
chr8 (380-408)||(3032695-3032723)
[»] chr6 (10 HSPs)
chr6 (288-408)||(18893877-18893997)
chr6 (288-408)||(6625560-6625680)
chr6 (288-408)||(7141465-7141585)
chr6 (288-408)||(29122116-29122236)
chr6 (288-408)||(6167698-6167818)
chr6 (288-397)||(3094790-3094901)
chr6 (288-398)||(29630267-29630378)
chr6 (331-389)||(13889791-13889849)
chr6 (290-367)||(7081155-7081232)
chr6 (290-367)||(8811127-8811204)
[»] chr5 (13 HSPs)
chr5 (288-408)||(24559270-24559390)
chr5 (288-408)||(24600302-24600422)
chr5 (288-408)||(19034484-19034604)
chr5 (288-408)||(33281011-33281131)
chr5 (288-403)||(9065900-9066015)
chr5 (288-408)||(37866077-37866197)
chr5 (288-408)||(43293421-43293541)
chr5 (288-408)||(4155932-4156052)
chr5 (288-408)||(13145645-13145764)
chr5 (288-398)||(43518062-43518175)
chr5 (288-356)||(31527393-31527461)
chr5 (352-408)||(31511149-31511205)
chr5 (289-367)||(12189146-12189224)
[»] chr4 (22 HSPs)
chr4 (288-408)||(19873898-19874018)
chr4 (288-408)||(20434364-20434484)
chr4 (288-408)||(25857742-25857862)
chr4 (288-408)||(28406214-28406334)
chr4 (288-408)||(37233981-37234101)
chr4 (288-408)||(42723957-42724077)
chr4 (288-408)||(53874886-53875006)
chr4 (288-408)||(614025-614145)
chr4 (288-408)||(23894970-23895090)
chr4 (288-408)||(52912969-52913089)
chr4 (288-408)||(52839508-52839628)
chr4 (288-408)||(55215369-55215489)
chr4 (288-408)||(55220069-55220189)
chr4 (288-408)||(39540177-39540297)
chr4 (288-408)||(56363020-56363139)
chr4 (288-408)||(53035794-53035914)
chr4 (288-403)||(55183308-55183423)
chr4 (288-389)||(42348862-42348963)
chr4 (288-396)||(38291643-38291751)
chr4 (288-376)||(52307265-52307353)
chr4 (288-359)||(10541857-10541928)
chr4 (372-408)||(42348961-42348997)
[»] chr3 (22 HSPs)
chr3 (288-408)||(20835357-20835477)
chr3 (288-408)||(33967083-33967203)
chr3 (288-407)||(22781683-22781802)
chr3 (288-408)||(6268133-6268253)
chr3 (288-408)||(25711088-25711208)
chr3 (288-403)||(37971454-37971569)
chr3 (288-401)||(4515796-4515909)
chr3 (288-408)||(33712399-33712518)
chr3 (288-404)||(38871322-38871438)
chr3 (288-408)||(36430469-36430588)
chr3 (288-408)||(41070037-41070156)
chr3 (288-408)||(53974512-53974631)
chr3 (288-403)||(4044588-4044703)
chr3 (288-408)||(10841208-10841327)
chr3 (288-398)||(20048536-20048649)
chr3 (288-398)||(10999529-10999641)
chr3 (288-397)||(40585955-40586066)
chr3 (288-330)||(7156541-7156583)
chr3 (289-367)||(47098139-47098217)
chr3 (289-367)||(1774218-1774296)
chr3 (361-403)||(7156488-7156532)
chr3 (376-407)||(4044492-4044523)
[»] chr2 (18 HSPs)
chr2 (288-408)||(927246-927366)
chr2 (288-408)||(25853195-25853315)
chr2 (288-408)||(34202481-34202601)
chr2 (288-408)||(37094290-37094410)
chr2 (288-408)||(45505548-45505668)
chr2 (288-408)||(1482013-1482133)
chr2 (288-408)||(1520378-1520498)
chr2 (288-408)||(44143562-44143682)
chr2 (288-404)||(39697544-39697660)
chr2 (288-408)||(40811536-40811655)
chr2 (288-403)||(2390455-2390569)
chr2 (288-403)||(21658129-21658243)
chr2 (288-403)||(42343170-42343284)
chr2 (289-408)||(875074-875195)
chr2 (288-408)||(13195901-13196020)
chr2 (288-407)||(3178428-3178546)
chr2 (295-398)||(10638986-10639091)
chr2 (288-372)||(43577205-43577289)
[»] chr1 (23 HSPs)
chr1 (288-408)||(26150927-26151047)
chr1 (288-408)||(34270535-34270655)
chr1 (288-408)||(52024927-52025047)
chr1 (288-408)||(2138007-2138127)
chr1 (288-408)||(44722073-44722193)
chr1 (288-408)||(51677010-51677130)
chr1 (288-403)||(39569222-39569337)
chr1 (288-403)||(52044156-52044271)
chr1 (288-408)||(50727999-50728119)
chr1 (288-403)||(18909417-18909532)
chr1 (288-408)||(42948391-42948512)
chr1 (288-408)||(24317382-24317501)
chr1 (288-403)||(2482396-2482510)
chr1 (288-390)||(6653426-6653528)
chr1 (288-408)||(20581700-20581822)
chr1 (288-403)||(13942345-13942460)
chr1 (289-359)||(40400236-40400306)
chr1 (288-353)||(33010603-33010668)
chr1 (288-333)||(15932988-15933033)
chr1 (288-327)||(13240166-13240205)
chr1 (288-330)||(49823406-49823448)
chr1 (376-408)||(13942525-13942557)
chr1 (361-403)||(13240110-13240154)
[»] scaffold0276 (2 HSPs)
scaffold0276 (288-408)||(13812-13931)
scaffold0276 (288-336)||(12722-12770)
[»] scaffold0368 (1 HSPs)
scaffold0368 (288-408)||(14064-14185)
[»] scaffold0438 (1 HSPs)
scaffold0438 (288-403)||(1882-1997)
[»] scaffold0007 (1 HSPs)
scaffold0007 (296-408)||(156878-156989)
[»] scaffold0896 (1 HSPs)
scaffold0896 (290-367)||(3575-3651)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 37183206 - 37182933
Alignment:
Q  20 tgtaacgagattttgctataagggttgggttataatgaatgatggcttctcttcacctttatatatagtggacggttgcttaacacgcaagctacttcct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  37183206 tgtaacgagattttgctataagggttgggttataatgaatgatggcttctcttcacctttatatatagtggacggttgcttaaaacgcaagctatttcct 37183107  T
Q  120 atttcatatc---nnnnnnnngttacactagcggaaatccgctcttttttgctacatgctacttccttaannnnnnnnaacagatttttgagaaaccttt 216  Q
    ||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||||||    
T  37183106 atttcatatctttttttttttgttacactagcggaaatccgctcttttttgctacatgctacttccttaattttctttaacagatttttgaaaaaccttt 37183007  T
Q  217 ctaaagtatgaaacctttaataacctaaattatcaaaaaataaataaatagttgaaaggaagaatgtaatttga 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37183006 ctaaagtatgaaacctttaataacctaaattatcaaaaaataaataaatagttgaaaggaagaatgtaatttga 37182933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 8215796 - 8215676
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8215796 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 8215697  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  8215696 tccttgttctgcgattcacag 8215676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 26015744 - 26015624
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26015744 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 26015645  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  26015644 tccttgttctgcgattcacag 26015624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 47065818 - 47065698
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47065818 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 47065719  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  47065718 tccttgttctgcgattcacag 47065698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 288 - 405
Target Start/End: Complemental strand, 32542061 - 32541944
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32542061 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 32541962  T
Q  388 tccttgttctgcgattca 405  Q
    ||||||||||||||||||    
T  32541961 tccttgttctgcgattca 32541944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 7900635 - 7900755
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7900635 tgatttcaaagaaaattcgaagcaaatcaagttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 7900734  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  7900735 tccttgttctgcgattcacag 7900755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 27325157 - 27325277
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27325157 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 27325256  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||| ||||||||||    
T  27325257 tccttgttctacgattcacag 27325277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 34591878 - 34591998
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  34591878 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttgtgggttctcaattctgattttgtgttt 34591977  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  34591978 tccttgttctgcgattcacag 34591998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 40705391 - 40705271
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  40705391 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttgtcttgttatgggttctcagttctgattttgtgttt 40705292  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  40705291 tccttgttctgcgattcacag 40705271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 43246835 - 43246715
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  43246835 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttctttttatgggttctcagttctgattttgtgttt 43246736  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  43246735 tccttgttctgcgattcacag 43246715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 46321924 - 46321804
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46321924 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttgaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 46321825  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  46321824 tccttgttctgcgattcacag 46321804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 40995389 - 40995509
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40995389 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 40995488  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||| || |||||||||    
T  40995489 tccttgttatgtgattcacag 40995509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 46924080 - 46924199
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  46924080 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctcagttctgattttgtgttt 46924178  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  46924179 tccttgttctgcgattcacag 46924199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 40994691 - 40994571
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  40994691 tgatttccaagaaaattcgaagcaaaccaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgagttctcagttctgattttgtgttt 40994592  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  40994591 tccttgttctgcgattcacag 40994571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 288 - 405
Target Start/End: Complemental strand, 32662267 - 32662150
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||    
T  32662267 tgatttcaaagaaaattcgaagcaaatcatgttagcaagtgttgttcttcaatcaattgtgtttttcctgttatgggttctcagttctgattttgtgttt 32662168  T
Q  388 tccttgttctgcgattca 405  Q
    ||||||||||||||||||    
T  32662167 tccttgttctgcgattca 32662150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 299 - 408
Target Start/End: Original strand, 35924318 - 35924427
Alignment:
Q  299 aaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttttccttgttctg 398  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35924318 aaaattcgaaacaaatcaggttagcaagtgttgttcttcaatcgattgcgtttttcttgttatgggttctcagttctgattttgtgttttccttgttctg 35924417  T
Q  399 cgattcacag 408  Q
    ||||||||||    
T  35924418 cgattcacag 35924427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 288 - 394
Target Start/End: Complemental strand, 8203319 - 8203211
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttct--gattttgtgt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||    
T  8203319 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgcgattttgtgt 8203220  T
Q  386 tttccttgt 394  Q
    |||||||||    
T  8203219 tttccttgt 8203211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 288 - 398
Target Start/End: Original strand, 25876978 - 25877090
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttct--gattttgtgt 385  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||||    
T  25876978 tgatttcaaataaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttcttatgggttctcagttctgcgattttgtgt 25877077  T
Q  386 tttccttgttctg 398  Q
    |||||||||||||    
T  25877078 tttccttgttctg 25877090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 47779387 - 47779274
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgt-ttttcttgttttgggttctcagttct--gattttgtg 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||  |||||||||    
T  47779387 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttttcttcttatgggttctcagttctgcgattttgtg 47779288  T
Q  385 ttttccttgttctg 398  Q
    ||||||||||||||    
T  47779287 ttttccttgttctg 47779274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 21278947 - 21278835
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttct--gattttgtgt 385  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||||    
T  21278947 tgatttcaaagaaaattcgaagcaaattaggttagcaagtgttgttcttcaatcgattgtgtttttcttcttatgggttctcagttctgcgattttgtgt 21278848  T
Q  386 tttccttgttctg 398  Q
    |||| ||||||||    
T  21278847 tttctttgttctg 21278835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 7791106 - 7791188
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctca 370  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  7791106 tgatttcaaagcaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgagttctca 7791188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 38875932 - 38875874
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattg 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38875932 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattg 38875874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 38283469 - 38283414
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcga 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38283469 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcga 38283414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 37085276 - 37085466
Alignment:
Q  49 ttataatgaatgatggcttctcttcacctt--tatatatagtggacggttgcttaacacgcaagctacttcctatttcatatcnnnnnnnngttacacta 146  Q
    |||||||||||||  | |||||||||||||  ||||||||||| |  ||||||||||| ||| ||| ||||||||||| ||||        |||||||||    
T  37085276 ttataatgaatgaatgattctcttcacctttatatatatagtgcaatgttgcttaacatgcacgctgcttcctatttcttatc--ttttttgttacacta 37085373  T
Q  147 gcggaaatccgctc--ttttttgctacatgctacttccttaannnnnnnnaacagatttttgagaaacctttctaaagtatgaaacctttaata 238  Q
    ||||||||| ||||  ||||||| ||||||||||||||||||        |||| |||||| | ||||||||||||| || |||||||||||||    
T  37085374 gcggaaatctgctcttttttttgttacatgctacttccttaattttctttaacaaatttttta-aaacctttctaaaataggaaacctttaata 37085466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 48642094 - 48642164
Alignment:
Q  289 gatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgtt 359  Q
    |||||||||||||||||||||||  | ||||||| ||||  |||||||||||||||| | |||||||||||    
T  48642094 gatttcaaagaaaattcgaagcatgtgaggttagtaagttgtgttcttcaatcgattatatttttcttgtt 48642164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 25765045 - 25765110
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttt 353  Q
    |||||||||||||||||||||||| || ||||||||| ||  |||||||||||||| | |||||||    
T  25765045 tgatttcaaagaaaattcgaagcagataaggttagcatgttgtgttcttcaatcgactatgttttt 25765110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 37076525 - 37076444
Alignment:
Q  48 gttataatgaatgatggcttctcttcacctttatatatagtggacggttgcttaacacgcaagctacttcctatttcatatc 129  Q
    ||||| ||| ||||||||||||||  |||||||| ||| ||  || ||||||||| || || ||||||||||||||||||||    
T  37076525 gttattatggatgatggcttctctcgacctttatttatggttcaccgttgcttaatacacacgctacttcctatttcatatc 37076444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 37076406 - 37076358
Alignment:
Q  138 gttacactagcggaaatccgctcttttttgctacatgctacttccttaa 186  Q
    ||||||||||||||||||||||| |||||| |||| ||| | |||||||    
T  37076406 gttacactagcggaaatccgctcctttttgttacacgctgcatccttaa 37076358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 4077 - 4197
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4077 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 4176  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  4177 tccttgttctgcgattcacag 4197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 23357138 - 23357018
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23357138 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 23357039  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  23357038 tccttgttctgcgattcacag 23357018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 288 - 405
Target Start/End: Complemental strand, 26122407 - 26122290
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26122407 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 26122308  T
Q  388 tccttgttctgcgattca 405  Q
    ||||||||||||||||||    
T  26122307 tccttgttctgcgattca 26122290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 8376442 - 8376562
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  8376442 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttctttttatgggttctcagttctgattttgtgttt 8376541  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  8376542 tccttgttctgcgattcacag 8376562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 24822605 - 24822485
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  24822605 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttctttttatgggttctcagttctgattttgtgttt 24822506  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  24822505 tccttgttctgcgattcacag 24822485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 288 - 405
Target Start/End: Original strand, 35605539 - 35605656
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  35605539 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgagttctcagttctgattttgtgttt 35605638  T
Q  388 tccttgttctgcgattca 405  Q
    ||||||||||||||||||    
T  35605639 tccttgttctgcgattca 35605656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 34564910 - 34564790
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  34564910 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttttttgttatgggttctcagttctgattttgtgttt 34564811  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||| ||||||||    
T  34564810 tccttgttctgctattcacag 34564790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 42512361 - 42512481
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42512361 tgatttcaaagaaaattcgaagcaaatcaagttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 42512460  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||| ||||||||    
T  42512461 tccttgttctgccattcacag 42512481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 26290660 - 26290545
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  26290660 tgatttcaaagaaaattcgaagcaaatcaggttagaaagtgttgttcttcaatcgattgtttttttcttgttatgggttctcagttctgattttgtgttt 26290561  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  26290560 tccttgttctgcgatt 26290545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 26303917 - 26303802
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  26303917 tgatttcaaagaaaattcgaagcaaatcaggttagaaagtgttgttcttcaatcgattgtttttttcttgttatgggttctcagttctgattttgtgttt 26303818  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  26303817 tccttgttctgcgatt 26303802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 26337272 - 26337157
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  26337272 tgatttcaaagaaaattcgaagcaaatcaggttagaaagtgttgttcttcaatcgattgtttttttcttgttatggattctcagttctgattttgtgttt 26337173  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  26337172 tccttgttctgcgatt 26337157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 43664207 - 43664092
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43664207 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttgtgggttctcagttctgattttgtgttt 43664108  T
Q  388 tccttgttctgcgatt 403  Q
    ||   |||||||||||    
T  43664107 tcacagttctgcgatt 43664092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 39365448 - 39365567
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||    
T  39365448 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaattgactgtg-ttttcttgttatgggttctcagttctgattttgtgttt 39365546  T
Q  388 tccttgttctgcgattcacag 408  Q
    ||||||||||| |||||||||    
T  39365547 tccttgttctgagattcacag 39365567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 3032779 - 3032708
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgtt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3032779 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttccttgtt 3032708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 5988390 - 5988461
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgtt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5988390 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcaattgtgtttttcttgtt 5988461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 3137106 - 3137035
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgtt 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  3137106 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtcttgttcttcaatcgattgtgttttccttgtt 3137035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 8656756 - 8656815
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgt 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8656756 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgt 8656815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 17122292 - 17122347
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcga 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17122292 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcga 17122347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 34917740 - 34917791
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34917740 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaa 34917791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 367
Target Start/End: Complemental strand, 2828232 - 2828154
Alignment:
Q  289 gatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttc 367  Q
    |||||||||||||||||||||||||| |||||| |||||  |||||||| ||||||||||||||||||||  |||||||    
T  2828232 gatttcaaagaaaattcgaagcaaataaggttaacaagttgtgttcttcgatcgattgtgtttttcttgtcatgggttc 2828154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 7969938 - 7969872
Alignment:
Q  289 gatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttct 355  Q
    ||||||||||||||||||||| | || ||||||| ||||  |||||||||||||||| |||||||||    
T  7969938 gatttcaaagaaaattcgaaggagatgaggttagtaagttgtgttcttcaatcgattatgtttttct 7969872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Complemental strand, 3032723 - 3032695
Alignment:
Q  380 ttgtgttttccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||||||||||    
T  3032723 ttgtgttttccttgttctgcgattcacag 3032695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 18893877 - 18893997
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18893877 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 18893976  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  18893977 tccttgttctgcgattcacag 18893997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 6625560 - 6625680
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  6625560 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatagattgtgtttttcttgttatgggttctcagttctgattttgtgttt 6625659  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  6625660 tccttgttctgcgattcacag 6625680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 7141465 - 7141585
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  7141465 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttttttgttatgggttctcagttctgattttgtgttt 7141564  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  7141565 tccttgttctgcgattcacag 7141585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 29122236 - 29122116
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  29122236 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttattatgggttctcagttctgattttgtgttt 29122137  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  29122136 tccttgttctgcgattcacag 29122116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 6167818 - 6167698
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||    
T  6167818 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgtggtcggttctcagttctgattttgtgttt 6167719  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  6167718 tccttgttctgcgattcacag 6167698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 288 - 397
Target Start/End: Original strand, 3094790 - 3094901
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttct--gattttgtgt 385  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||||    
T  3094790 tgatttcaaataaaattcgaagcaaatcatgttagcaagtgttgttcttcaatcgattgtgtttttcttcttatgggttctcagttctgcgattttgtgt 3094889  T
Q  386 tttccttgttct 397  Q
    ||||||||||||    
T  3094890 tttccttgttct 3094901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 29630378 - 29630267
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttct--gattttgtgt 385  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||  ||||||||||    
T  29630378 tgatttcaaagaaaattcaaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttcttatgggttctcagttctgcgattttgtgt 29630280  T
Q  386 tttccttgttctg 398  Q
    |||||||||||||    
T  29630279 tttccttgttctg 29630267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 13889849 - 13889791
Alignment:
Q  331 gttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttttc 389  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13889849 gttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttttc 13889791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 367
Target Start/End: Original strand, 7081155 - 7081232
Alignment:
Q  290 atttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttc 367  Q
    |||||||||||| |||||||||||| |||||| |||||  | |||||||||| ||| ||||||||||||| |||||||    
T  7081155 atttcaaagaaatttcgaagcaaataaggttaacaagttgtattcttcaatcaattatgtttttcttgttatgggttc 7081232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 367
Target Start/End: Complemental strand, 8811204 - 8811127
Alignment:
Q  290 atttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttc 367  Q
    |||||||||||| ||| |||||||| ||||||||||||  | |||||||||| ||| ||||||||||||| |||||||    
T  8811204 atttcaaagaaatttcaaagcaaataaggttagcaagttgtattcttcaatcaattatgtttttcttgttatgggttc 8811127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 24559270 - 24559390
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24559270 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 24559369  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  24559370 tccttgttctgcgattcacag 24559390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 24600302 - 24600422
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24600302 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 24600401  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  24600402 tccttgttctgcgattcacag 24600422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 19034604 - 19034484
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  19034604 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatggattctcagttctgattttgtgttt 19034505  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  19034504 tccttgttctgcgattcacag 19034484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 33281011 - 33281131
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  33281011 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcaattgtgtttttcttgttatgggttctcagttctgattttgtgttt 33281110  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  33281111 tccttgttctgcgattcacag 33281131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 288 - 403
Target Start/End: Original strand, 9065900 - 9066015
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9065900 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 9065999  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  9066000 tccttgttctgcgatt 9066015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 37866077 - 37866197
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||    
T  37866077 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttattatgggttctcagttctgattttgtgctt 37866176  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  37866177 tccttgttctgcgattcacag 37866197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 43293541 - 43293421
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  43293541 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcaattgtgtttttcttgttatgggttctcagttctgattttgtgttt 43293442  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||| ||||||    
T  43293441 tccttgttctgcgagtcacag 43293421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 4156052 - 4155932
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  4156052 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttacgggttctcagttctgattttgtgttt 4155953  T
Q  388 tccttgttctgcgattcacag 408  Q
    || ||||||| ||||||||||    
T  4155952 tcattgttctacgattcacag 4155932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 13145764 - 13145645
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  13145764 tgatttcaaagaaaattcgaagcaaatcatgttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctcagttctgattttgtgttt 13145666  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  13145665 tccttgttctgcgattcacag 13145645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 43518175 - 43518062
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgt-ttttcttgttttgggttctcagttct--gattttgtg 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||  |||||||||    
T  43518175 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttttcttcttatgggttctcagttctgcgattttgtg 43518076  T
Q  385 ttttccttgttctg 398  Q
    ||||||||||||||    
T  43518075 ttttccttgttctg 43518062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 31527461 - 31527393
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttctt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31527461 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttctt 31527393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 31511205 - 31511149
Alignment:
Q  352 ttcttgttttgggttctcagttctgattttgtgttttccttgttctgcgattcacag 408  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31511205 ttcttgttatgggttctcagttctgattttgtgttttccttgttctgcgattcacag 31511149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 367
Target Start/End: Complemental strand, 12189224 - 12189146
Alignment:
Q  289 gatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttc 367  Q
    ||||||||||||| |||||||||||| ||||||||||||| |||||||| ||| ||| ||||||||||||  |||||||    
T  12189224 gatttcaaagaaagttcgaagcaaatgaggttagcaagtggtgttcttcgatcaattatgtttttcttgtcatgggttc 12189146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 19874018 - 19873898
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19874018 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 19873919  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  19873918 tccttgttctgcgattcacag 19873898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 20434364 - 20434484
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20434364 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 20434463  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  20434464 tccttgttctgcgattcacag 20434484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 25857742 - 25857862
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25857742 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 25857841  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  25857842 tccttgttctgcgattcacag 25857862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 28406334 - 28406214
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28406334 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 28406235  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  28406234 tccttgttctgcgattcacag 28406214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 37234101 - 37233981
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37234101 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 37234002  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  37234001 tccttgttctgcgattcacag 37233981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 42724077 - 42723957
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42724077 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 42723978  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  42723977 tccttgttctgcgattcacag 42723957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 53875006 - 53874886
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53875006 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 53874907  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  53874906 tccttgttctgcgattcacag 53874886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 614025 - 614145
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  614025 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttcttagttctgattttgtgttt 614124  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  614125 tccttgttctgcgattcacag 614145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 23895090 - 23894970
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23895090 tgatttcgaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 23894991  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  23894990 tccttgttctgcgattcacag 23894970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 52913089 - 52912969
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  52913089 tgatttcaaagaaaattcgaagtaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 52912990  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  52912989 tccttgttctgcgattcacag 52912969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 52839628 - 52839508
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  52839628 tgatttcaaagaaaattcgaagcaaatcaggttatcaagtgttgttcttcaatcgattgtgtttttcttattatgggttctcagttctgattttgtgttt 52839529  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  52839528 tccttgttctgcgattcacag 52839508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 55215489 - 55215369
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  55215489 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttattcaatcgattgtgtttttcttgttacgggttctcagttctgattttgtgttt 55215390  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  55215389 tccttgttctgcgattcacag 55215369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 55220069 - 55220189
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  55220069 tgatttcaaataaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttacgggttctcagttctgattttgtgttt 55220168  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  55220169 tccttgttctgcgattcacag 55220189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 39540297 - 39540177
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39540297 tgatttcaaagaaaattcgaaacaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 39540198  T
Q  388 tccttgttctgcgattcacag 408  Q
    | ||| |||||||||||||||    
T  39540197 ttcttattctgcgattcacag 39540177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 56363020 - 56363139
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  56363020 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctccgttctgattttgtgttt 56363118  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  56363119 tccttgttctgcgattcacag 56363139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 53035914 - 53035794
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  || |||||||||||||||||||||||    
T  53035914 tgatttcaaagaaaattcgaagcaaatcaggttagcaaatgttgttcttcaatcgattgtatttttcttgttacggattctcagttctgattttgtgttt 53035815  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  53035814 tccttgttctgcgattcacag 53035794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 55183423 - 55183308
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||    
T  55183423 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttacgggttctcttttctgattttgtgttt 55183324  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  55183323 tccttgttctgcgatt 55183308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 288 - 389
Target Start/End: Original strand, 42348862 - 42348963
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42348862 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 42348961  T
Q  388 tc 389  Q
    ||    
T  42348962 tc 42348963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 38291751 - 38291643
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||    
T  38291751 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatccattgtgtttttcttgttatgggttctcagttctgattttgagttt 38291652  T
Q  388 tccttgttc 396  Q
    |||||||||    
T  38291651 tccttgttc 38291643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 288 - 376
Target Start/End: Complemental strand, 52307353 - 52307265
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctg 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52307353 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctg 52307265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 10541928 - 10541857
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgtt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10541928 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttccttgtt 10541857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 42348961 - 42348997
Alignment:
Q  372 ttctgattttgtgttttccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||||||||||||||||||    
T  42348961 ttctgattttgtgttttccttgttctgcgattcacag 42348997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 20835477 - 20835357
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20835477 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 20835378  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  20835377 tccttgttctgcgattcacag 20835357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 33967083 - 33967203
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33967083 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 33967182  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  33967183 tccttgttctgcgattcacag 33967203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 288 - 407
Target Start/End: Complemental strand, 22781802 - 22781683
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22781802 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 22781703  T
Q  388 tccttgttctgcgattcaca 407  Q
    ||||||||||||||||||||    
T  22781702 tccttgttctgcgattcaca 22781683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 6268253 - 6268133
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  6268253 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttgtgggttcttagttctgattttgtgttt 6268154  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  6268153 tccttgttctgcgattcacag 6268133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 25711088 - 25711208
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  25711088 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttctttttatgggttctcagttctgattttgtgttt 25711187  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  25711188 tccttgttctgcgattcacag 25711208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 37971569 - 37971454
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37971569 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 37971470  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  37971469 tccttgttctgcgatt 37971454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 288 - 401
Target Start/End: Complemental strand, 4515909 - 4515796
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4515909 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 4515810  T
Q  388 tccttgttctgcga 401  Q
    ||||||||||||||    
T  4515809 tccttgttctgcga 4515796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 33712518 - 33712399
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  33712518 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctcagttctgattttgtgttt 33712420  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  33712419 tccttgttctgcgattcacag 33712399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 404
Target Start/End: Original strand, 38871322 - 38871438
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  38871322 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttctttttatgggttctcagttctgattttgtgttt 38871421  T
Q  388 tccttgttctgcgattc 404  Q
    |||||||||||||||||    
T  38871422 tccttgttctgcgattc 38871438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 36430469 - 36430588
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  36430469 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctcagttctaattttgtgttt 36430567  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  36430568 tccttgttctgcgattcacag 36430588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 41070037 - 41070156
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  41070037 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctcagttctaattttgtgttt 41070135  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  41070136 tccttgttctgcgattcacag 41070156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 53974512 - 53974631
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  53974512 tgatttcaaagaaaattcgaagcaaatcaggttaacaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctcagttctgattttgtgttt 53974610  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  53974611 tccttgttctgcgattcacag 53974631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 4044703 - 4044588
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  4044703 tgatttcaaagaaaattcaaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttattatgggttctcagttctgattttgtgttt 4044604  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  4044603 tccttgttctgcgatt 4044588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 10841327 - 10841208
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||||||    
T  10841327 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttctcttgttatgggttctcagttctaattttgtgttt 10841229  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  10841228 tccttgttctgcgattcacag 10841208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 288 - 398
Target Start/End: Original strand, 20048536 - 20048649
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-tttttcttgttttgggttctcagttct--gattttgtg 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||  |||||||||    
T  20048536 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttttcttcttatgggttctcagttcttcgattttgtg 20048635  T
Q  385 ttttccttgttctg 398  Q
    ||||||||||||||    
T  20048636 ttttccttgttctg 20048649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 10999641 - 10999529
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttct--gattttgtgt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| ||  ||||||||||    
T  10999641 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcaattgtgtttttcttcttatgggttctcagtactgcgattttgtgt 10999542  T
Q  386 tttccttgttctg 398  Q
    |||||||||||||    
T  10999541 tttccttgttctg 10999529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 288 - 397
Target Start/End: Complemental strand, 40586066 - 40585955
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttct--gattttgtgt 385  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||||    
T  40586066 tgattttaaagaaaattcgaagcaaatcaagttagcaagtgttgttcttcaatcgattgtgtttttcttcttatgggttctcagttctgcgattttgtgt 40585967  T
Q  386 tttccttgttct 397  Q
    ||||||||||||    
T  40585966 tttccttgttct 40585955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 7156583 - 7156541
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgtt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7156583 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgtt 7156541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 367
Target Start/End: Complemental strand, 47098217 - 47098139
Alignment:
Q  289 gatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttc 367  Q
    |||| ||||||||||| ||||||||| ||||||||||||  |||||||||||| ||| ||||||||||||  |||||||    
T  47098217 gattgcaaagaaaatttgaagcaaataaggttagcaagttgtgttcttcaatcaattatgtttttcttgtcatgggttc 47098139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 367
Target Start/End: Original strand, 1774218 - 1774296
Alignment:
Q  289 gatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttc 367  Q
    |||||||||||||||| ||||||||| ||||||| |||   |||||||||||||||| |||||| |||||  |||||||    
T  1774218 gatttcaaagaaaatttgaagcaaataaggttaggaagctatgttcttcaatcgattatgttttacttgtcatgggttc 1774296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 7156532 - 7156488
Alignment:
Q  361 tgggttctcagttctg--attttgtgttttccttgttctgcgatt 403  Q
    ||||||||||||||||  |||||||||||||||||||||||||||    
T  7156532 tgggttctcagttctgcgattttgtgttttccttgttctgcgatt 7156488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 407
Target Start/End: Complemental strand, 4044523 - 4044492
Alignment:
Q  376 gattttgtgttttccttgttctgcgattcaca 407  Q
    ||||||||||||||||||||||||||||||||    
T  4044523 gattttgtgttttccttgttctgcgattcaca 4044492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 927246 - 927366
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  927246 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 927345  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  927346 tccttgttctgcgattcacag 927366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 25853315 - 25853195
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25853315 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 25853216  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  25853215 tccttgttctgcgattcacag 25853195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 34202481 - 34202601
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34202481 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 34202580  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  34202581 tccttgttctgcgattcacag 34202601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 37094290 - 37094410
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37094290 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttgtgggttctcagttctgattttgtgttt 37094389  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  37094390 tccttgttctgcgattcacag 37094410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 45505668 - 45505548
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45505668 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 45505569  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  45505568 tccttgttctgcgattcacag 45505548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 1482013 - 1482133
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1482013 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 1482112  T
Q  388 tccttgttctgcgattcacag 408  Q
    ||||| |||||||||||||||    
T  1482113 tccttattctgcgattcacag 1482133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 1520378 - 1520498
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  1520378 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcaattgtgtttttcttgttatgggttctcagttctgattttgtgttt 1520477  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  1520478 tccttgttctgcgattcacag 1520498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 44143562 - 44143682
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44143562 tgatttcaaagaaaatttgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 44143661  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  44143662 tccttgttctgcgattcacag 44143682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 404
Target Start/End: Complemental strand, 39697660 - 39697544
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  39697660 tgatttcaaagaaaattagaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtattt 39697561  T
Q  388 tccttgttctgcgattc 404  Q
    |||||||||||||||||    
T  39697560 tccttgttctgcgattc 39697544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 40811655 - 40811536
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  40811655 tgatttcaaagaaaatttgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctcagttctgattttgtgttt 40811557  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  40811556 tccttgttctgcgattcacag 40811536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 2390569 - 2390455
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  2390569 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctcagttctgattttgtgttt 2390471  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  2390470 tccttgttctgcgatt 2390455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 288 - 403
Target Start/End: Original strand, 21658129 - 21658243
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  21658129 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctcagttctgattttgtgttt 21658227  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  21658228 tccttgttctgcgatt 21658243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 288 - 403
Target Start/End: Original strand, 42343170 - 42343284
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  42343170 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgggttctcagttctgattttgtgttt 42343268  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  42343269 tccttgttctgcgatt 42343284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 875074 - 875195
Alignment:
Q  289 gatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttc--tgattttgtgtt 386  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  875074 gatttcaaagaaaattcaaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgtgattttgtgtt 875173  T
Q  387 ttccttgttctgcgattcacag 408  Q
    ||||||||||||||||||||||    
T  875174 ttccttgttctgcgattcacag 875195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 13196020 - 13195901
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  13196020 tgatttcaaagaaaatttgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtg-ttttcttgttatgagttctcagttctgattttgtgttt 13195922  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||| ||||||||||||    
T  13195921 tccttgttttgcgattcacag 13195901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 288 - 407
Target Start/End: Original strand, 3178428 - 3178546
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  3178428 tgatttcaaagaaaattcgaagcaaatcaggttaacaagtgttgttcttcaatcgattgtgtttttcttgttat-ggttctcagttttgattttgtgttt 3178526  T
Q  388 tccttgttctgcgattcaca 407  Q
    ||||| ||||||||||||||    
T  3178527 tccttattctgcgattcaca 3178546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 10638986 - 10639091
Alignment:
Q  295 aaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttct--gattttgtgttttcctt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||  |||||||||||||||||    
T  10638986 aaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcaattgtgtttttcttcttatgggttctcagttctgcgattttgtgttttcctt 10639085  T
Q  393 gttctg 398  Q
    ||||||    
T  10639086 gttctg 10639091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 43577205 - 43577289
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagt 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  43577205 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttgaatcgattgtgtttttcttgttatgggttctcagt 43577289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 26151047 - 26150927
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26151047 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 26150948  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  26150947 tccttgttctgcgattcacag 26150927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 34270655 - 34270535
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34270655 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 34270556  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  34270555 tccttgttctgcgattcacag 34270535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 52024927 - 52025047
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  52024927 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 52025026  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  52025027 tccttgttctgcgattcacag 52025047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 2138127 - 2138007
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2138127 tgatttcaaagaaaattcgaagcaaatcaagttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 2138028  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  2138027 tccttgttctgcgattcacag 2138007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 44722073 - 44722193
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44722073 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 44722172  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||| ||||||||||||    
T  44722173 tccttgttttgcgattcacag 44722193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 51677130 - 51677010
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51677130 tgatttcaaagaaaattcgaagcaaatcaggttaacaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 51677031  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  51677030 tccttgttctgcgattcacag 51677010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 39569337 - 39569222
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39569337 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 39569238  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  39569237 tccttgttctgcgatt 39569222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 52044271 - 52044156
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  52044271 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 52044172  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  52044171 tccttgttctgcgatt 52044156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 50727999 - 50728119
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  50727999 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaattgattgtgtttttcttgttgtgggttctcagttctgattttgtgttt 50728098  T
Q  388 tccttgttctgcgattcacag 408  Q
    ||||| |||||||||||||||    
T  50728099 tccttattctgcgattcacag 50728119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 288 - 403
Target Start/End: Original strand, 18909417 - 18909532
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  18909417 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttttgattttgtgttt 18909516  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  18909517 tccttgttctgcgatt 18909532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 42948391 - 42948512
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaa-tcgattgtgtttttcttgttttgggttctcagttctgattttgtgtt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  42948391 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgtt 42948490  T
Q  387 ttccttgttctgcgattcacag 408  Q
    ||| ||||||||||||||||||    
T  42948491 ttcattgttctgcgattcacag 42948512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 24317382 - 24317501
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  24317382 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattatg-ttttcttgttatgggttctcagttctgattttgtgttt 24317480  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  24317481 tccttgttctgcgattcacag 24317501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 2482510 - 2482396
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2482510 tgatttcaaagaaa-ttcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 2482412  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  2482411 tccttgttctgcgatt 2482396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 288 - 390
Target Start/End: Original strand, 6653426 - 6653528
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6653426 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgttt 6653525  T
Q  388 tcc 390  Q
    |||    
T  6653526 tcc 6653528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 20581700 - 20581822
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttct--gattttgtgt 385  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||    
T  20581700 tgatttcaaagaaaattcgaagcaaattatgttagcaagtgttgttcttcaatcgattgtgtttttcttgttatgggttctcagttctgcgattttgtgt 20581799  T
Q  386 tttccttgttctgcgattcacag 408  Q
    ||||||||||||| |||||||||    
T  20581800 tttccttgttctgtgattcacag 20581822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 288 - 403
Target Start/End: Original strand, 13942345 - 13942460
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||    
T  13942345 tgatttcaaagaaaatttaaagcaaatcaggttagcaagtgttgttcttcactcgattgtgtttttcttattatgggttctcagttctgattttgtgttt 13942444  T
Q  388 tccttgttctgcgatt 403  Q
    | ||||||||||||||    
T  13942445 ttcttgttctgcgatt 13942460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 40400236 - 40400306
Alignment:
Q  289 gatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgtt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40400236 gatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttccttgtt 40400306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 33010668 - 33010603
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33010668 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttt 33010603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 15932988 - 15933033
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgtt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15932988 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgtt 15933033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 13240205 - 13240166
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagt 327  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13240205 tgatttcaaagaaaattcgaagcaaatcaggttagcaagt 13240166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 49823406 - 49823448
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgtt 330  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  49823406 tgatttcaaagaaaattcgaagtaaatcaggttagcaagtgtt 49823448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 13942525 - 13942557
Alignment:
Q  376 gattttgtgttttccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||||||||||||||    
T  13942525 gattttgtgttttccttgttctgcgattcacag 13942557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 13240154 - 13240110
Alignment:
Q  361 tgggttctcagttctg--attttgtgttttccttgttctgcgatt 403  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||    
T  13240154 tgggttctcagttctgcgattttgtgttttccttattctgcgatt 13240110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 408
Target Start/End: Complemental strand, 13931 - 13812
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  13931 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgttttt-ttgttatgggttctcagttctgattttgtgttt 13833  T
Q  388 tccttgttctgcgattcacag 408  Q
    |||||||||||||||||||||    
T  13832 tccttgttctgcgattcacag 13812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 12722 - 12770
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttctt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12722 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttctt 12770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 14064 - 14185
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaa-tcgattgtgtttttcttgttttgggttctcagttctgattttgtgtt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  14064 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaaatcgattgtgtttttcttgttatgggttctcagttctgattttgtgtt 14163  T
Q  387 ttccttgttctgcgattcacag 408  Q
    ||| ||||||||||||||||||    
T  14164 ttcattgttctgcgattcacag 14185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 1997 - 1882
Alignment:
Q  288 tgatttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttt 387  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  1997 tgatttcaaagaaaattcgaagcaaatcaggttagaaagtgttgttcttcaatcgattgtttttttcttgttatgggttctcagttctgattttgtgttt 1898  T
Q  388 tccttgttctgcgatt 403  Q
    ||||||||||||||||    
T  1897 tccttgttctgcgatt 1882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 296 - 408
Target Start/End: Complemental strand, 156989 - 156878
Alignment:
Q  296 aagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttctcagttctgattttgtgttttccttgtt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||||||||||||||||    
T  156989 aagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgcg-ttttcttgttatgggttctcagttctaattttgtgttttccttgtt 156891  T
Q  396 ctgcgattcacag 408  Q
    |||||||||||||    
T  156890 ctgcgattcacag 156878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 367
Target Start/End: Complemental strand, 3651 - 3575
Alignment:
Q  290 atttcaaagaaaattcgaagcaaatcaggttagcaagtgttgttcttcaatcgattgtgtttttcttgttttgggttc 367  Q
    |||||||||||  ||| |||||||| ||||||||||||  | |||||||||| ||| ||||||||||||| |||||||    
T  3651 atttcaaagaat-ttcaaagcaaataaggttagcaagttgtattcttcaatcaattatgtttttcttgttatgggttc 3575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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