View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_high_8 (Length: 297)
Name: NF8727_high_8
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 33632355 - 33632635
Alignment:
| Q |
5 |
gtatgttggcattatgtgcttaaaatatgccttgttagtgtaaatatagtataacattaaaaacaaggccaagaaaagagaagatacaattaagatatga |
104 |
Q |
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| T |
33632355 |
gtatgttggcattatgtgcttaagatataccttgttagtttaaatataatataacattaaaaacaaggccaagaaaagagaagatacaattaagatatga |
33632454 |
T |
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| Q |
105 |
taatgcaattgagtttagcagagaagccttgttattttttgtacgcataacacaagatgcttcctcctttgcatttacatgacagtgatacaaagtagaa |
204 |
Q |
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| T |
33632455 |
taatgcaattgagtttagcagagaagtcttgttattttttgtacgcataacacaagatgcttcctcctttgcatttacatgacagtgatacaaagtagaa |
33632554 |
T |
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| Q |
205 |
tgaaagcaaatgataatcataattcatggtggtatggtattgacccacgaac-aattattgcataaccatacattattgat |
284 |
Q |
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| T |
33632555 |
tgaaagcaaatgataatcataattcatggtggtatggtattgacccacgaacaaattattgcataatcatactttattgat |
33632635 |
T |
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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 8156694 - 8156816
Alignment:
| Q |
6 |
tatgttggcattatgtgcttaaaatatgccttgttagtgtaaatatag-tataa---cattaaaaacaaggccaagaaaagagaagatacaat---taag |
98 |
Q |
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| T |
8156694 |
tatgttggcattatgtgcttaagatattcctagtcagtgtagatataactataatagcattaaaaacaaggccgggaaaagagaagatacaatgattaag |
8156793 |
T |
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| Q |
99 |
atatgataatgcaattgagttta |
121 |
Q |
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| T |
8156794 |
atatgataatgcaattgagttta |
8156816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 50980218 - 50980296
Alignment:
| Q |
150 |
cataacacaagatgcttcctcctttgcatttacatgacagtgatacaaagtagaatgaaagcaaatgataatcataatt |
228 |
Q |
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||||| ||||||||||| ||||||| ||| || | ||||| ||||||||||||| ||||| |||||||||||||||| |
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| T |
50980218 |
cataaaacaagatgcttgctcctttacatctatttaacagtcatacaaagtagaacgaaaggtaatgataatcataatt |
50980296 |
T |
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