View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_high_9 (Length: 281)
Name: NF8727_high_9
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 24228957 - 24229221
Alignment:
| Q |
19 |
aacacaactcagttgtaccaacctgttacatgacacaacaaagtagccatgaatgttttccacgtggaaccactaccattaagctatctagctggaggag |
118 |
Q |
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| T |
24228957 |
aacacaactcagttgtaccaacctgttacatgacacaacaaagtagccatgaatgttttccacgtggaaccactaccattaagctatctagctggaggag |
24229056 |
T |
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| Q |
119 |
ctacta--gtcatacaaagttgatgcagctgattgcaaattagaagaaagttgcacttagagaaatgagagaaatcttcagctcaattcagcacaaaaga |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24229057 |
ctactatagtcatacaaagttgatgcagctgattgcaaattagaacaaagttgcacttagagaaatgagagaaatcttcagctcaattcagcacaaaaga |
24229156 |
T |
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| Q |
217 |
gagaaatgctaaaaataaagtcatctacaaactctaaaaaataatttactcacataaagtttaat |
281 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
24229157 |
gagaaatgctaaaaataaagtcatctacaaactcaaaaaaataatttactcacatcaagtttaat |
24229221 |
T |
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