View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_low_12 (Length: 270)
Name: NF8727_low_12
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 24452466 - 24452225
Alignment:
| Q |
19 |
actattaacttgcaggaccccaatgccaaggagtacacagtcttgggttcttgttcagtccttgcctcacaaacagttctcaagcatttgactacggtga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24452466 |
actattaacttgcaggaccccaatgccaaggagtacacagtcttgggttcttgttcagtccttgcctcacaaacagttctcaagcatttgactacggtga |
24452367 |
T |
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| Q |
119 |
ttgtcacggattaggtttttaaaattcttttattgacagctaatattttcattcctcttacatagtttctttgattctaggatgaaaagtcattctcttc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24452366 |
ttgtcacggattaggtttttaaaattcttttattgacagctaatattttcattcctcttacatagtttctttgattctaggatcaaaagtcattctcttc |
24452267 |
T |
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| Q |
219 |
atttatcttgtcaattctatcaaggtaattctattttctctg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
24452266 |
atttatcttgtcaattctatcaaggtaattctattttctctg |
24452225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 24470143 - 24469901
Alignment:
| Q |
19 |
actattaacttgcaggaccccaatgccaaggagtacacagtcttgggttcttgttcagtccttgcctcacaaacagttctcaagcatttgactacggtga |
118 |
Q |
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|||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24470143 |
actaataacttgcaggacccaaatgccaaggagtatacagtcttgggttcttgttcagtccttgcctcacaaacagttctcaagcatttgactacggtga |
24470044 |
T |
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| Q |
119 |
ttgtcacggattaggttttt-aaaattcttttattgacagctaatattttcattcctcttacatagtttctttgattctaggatgaaaagtcattctctt |
217 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24470043 |
ttgtcaaggattaggttttttaaaattcttttattgacagctaatattttcattcctcttacatagtttctttgattctaggatcaaaagtcattctctt |
24469944 |
T |
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| Q |
218 |
catttatcttgtcaattctatcaaggtaattctattttctctg |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24469943 |
catttatcttgtcaattctatcaaggtaattctattttctctg |
24469901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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