View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8727_low_14 (Length: 255)

Name: NF8727_low_14
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8727_low_14
NF8727_low_14
[»] chr3 (7 HSPs)
chr3 (43-110)||(2443793-2443860)
chr3 (43-102)||(7425019-7425078)
chr3 (43-102)||(12220592-12220651)
chr3 (178-224)||(2339179-2339225)
chr3 (175-224)||(52893141-52893190)
chr3 (181-223)||(9456119-9456161)
chr3 (165-210)||(40922562-40922607)
[»] chr7 (4 HSPs)
chr7 (173-225)||(21453176-21453228)
chr7 (132-224)||(12003285-12003377)
chr7 (178-224)||(31418966-31419012)
chr7 (188-224)||(6472699-6472735)
[»] chr5 (7 HSPs)
chr5 (175-224)||(21745030-21745079)
chr5 (175-224)||(42740885-42740934)
chr5 (177-225)||(32863332-32863380)
chr5 (177-224)||(3173850-3173896)
chr5 (180-231)||(43299930-43299980)
chr5 (175-225)||(18740033-18740082)
chr5 (178-224)||(26063041-26063087)
[»] chr4 (7 HSPs)
chr4 (178-222)||(33754314-33754358)
chr4 (177-225)||(46164750-46164798)
chr4 (165-224)||(14800345-14800404)
chr4 (177-210)||(8433370-8433403)
chr4 (175-216)||(44504341-44504382)
chr4 (178-210)||(21421933-21421965)
chr4 (177-209)||(47825605-47825637)
[»] chr8 (5 HSPs)
chr8 (178-224)||(1667823-1667869)
chr8 (178-224)||(16658528-16658574)
chr8 (165-224)||(33360101-33360160)
chr8 (177-210)||(32381211-32381244)
chr8 (177-210)||(32435166-32435199)
[»] chr6 (3 HSPs)
chr6 (177-224)||(16497559-16497606)
chr6 (165-210)||(7170730-7170775)
chr6 (177-225)||(14125097-14125144)
[»] chr2 (1 HSPs)
chr2 (182-216)||(38978988-38979022)
[»] chr1 (2 HSPs)
chr1 (177-222)||(26014217-26014262)
chr1 (178-210)||(18994627-18994659)
[»] scaffold0005 (1 HSPs)
scaffold0005 (165-224)||(39323-39382)
[»] scaffold1160 (1 HSPs)
scaffold1160 (175-221)||(2168-2214)


Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 2443793 - 2443860
Alignment:
Q  43 agccgggctcctccagattgactcaaacacccacttctccaagttattcaacctatcatcatctataa 110  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2443793 agccgggctcctccaaattgactcaaacatccacttctccaagttattcaacctatcatcatctataa 2443860  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 7425078 - 7425019
Alignment:
Q  43 agccgggctcctccagattgactcaaacacccacttctccaagttattcaacctatcatc 102  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  7425078 agccgggctcttccaaattgactcaaacacccacttctccaagttattcaatctatcatc 7425019  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 12220592 - 12220651
Alignment:
Q  43 agccgggctcctccagattgactcaaacacccacttctccaagttattcaacctatcatc 102  Q
    |||||| ||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||    
T  12220592 agccggactcttccaaattgactcaaaaacccacttctccaagttattcaatctatcatc 12220651  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 2339179 - 2339225
Alignment:
Q  178 atggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  2339179 atggggtggcggtggctcccccttgccaccccccagttccgccactg 2339225  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 52893190 - 52893141
Alignment:
Q  175 aggatggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||||||    
T  52893190 aggatggggtggcggtggctcccccttgccaacccccagttccgccactg 52893141  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 9456161 - 9456119
Alignment:
Q  181 gggtggtggtggctcccccttgccaccccccagttctgccact 223  Q
    |||||| ||||||||||||||||||||||||||||| ||||||    
T  9456161 gggtggcggtggctcccccttgccaccccccagttccgccact 9456119  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 40922607 - 40922562
Alignment:
Q  165 tttcacacaaaggatggggtggtggtggctcccccttgccaccccc 210  Q
    ||||||| |||  ||||||||| |||||||||||||||||||||||    
T  40922607 tttcacataaaaaatggggtggcggtggctcccccttgccaccccc 40922562  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 21453176 - 21453228
Alignment:
Q  173 aaaggatggggtggtggtggctcccccttgccaccccccagttctgccactga 225  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  21453176 aaaggatggggtggcggtggctcccccttgccaccccccagttccgccactga 21453228  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 12003285 - 12003377
Alignment:
Q  132 aaataataattttaatgaaaggtataatggtattttcacacaaaggatggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    ||||| || |||||||||| || ||||| ||| ||||    |||||||||||||| ||||||||| ||||||||||||||||||| |||||||    
T  12003285 aaatattagttttaatgaagggcataatagtaatttccataaaaggatggggtggcggtggctcctccttgccaccccccagttccgccactg 12003377  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 31419012 - 31418966
Alignment:
Q  178 atggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||    
T  31419012 atggggtggcggtggctcccccttgccaccccccggttccgccactg 31418966  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 6472699 - 6472735
Alignment:
Q  188 ggtggctcccccttgccaccccccagttctgccactg 224  Q
    ||||||||||||||||||||||||||||| |||||||    
T  6472699 ggtggctcccccttgccaccccccagttccgccactg 6472735  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 21745030 - 21745079
Alignment:
Q  175 aggatggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  21745030 aggatggggtggcggtggctcccccttgccaccccccagttccgccactg 21745079  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 42740885 - 42740934
Alignment:
Q  175 aggatggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  42740885 aggatggggtggcggtggctcccccttgccaccccccagttccgccactg 42740934  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 32863380 - 32863332
Alignment:
Q  177 gatggggtggtggtggctcccccttgccaccccccagttctgccactga 225  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  32863380 gatggggtggcggtggctcccccttgccaccccccagttccgccactga 32863332  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 3173896 - 3173850
Alignment:
Q  177 gatggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||||||    
T  3173896 gatggggtggcggtggctcccccttgccac-ccccagttccgccactg 3173850  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 43299980 - 43299930
Alignment:
Q  180 ggggtggtggtggctcccccttgccaccccccagttctgccactgactataa 231  Q
    ||||||| ||||||||||||||||||  ||||||||| ||||||||||||||    
T  43299980 ggggtggcggtggctcccccttgcca-accccagttccgccactgactataa 43299930  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 18740033 - 18740082
Alignment:
Q  175 aggatggggtggtggtggctcccccttgccaccccccagttctgccactga 225  Q
    |||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  18740033 aggatggggtggcggtggctcccccttgcca-accccagttccgccactga 18740082  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 26063087 - 26063041
Alignment:
Q  178 atggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    ||||||||| |||||||||||||||||||||||| | || |||||||    
T  26063087 atggggtggcggtggctcccccttgccaccccccggctccgccactg 26063041  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 33754314 - 33754358
Alignment:
Q  178 atggggtggtggtggctcccccttgccaccccccagttctgccac 222  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  33754314 atggggtggcggtggctcccccttgccaccccccagttctgccac 33754358  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 46164750 - 46164798
Alignment:
Q  177 gatggggtggtggtggctcccccttgccaccccccagttctgccactga 225  Q
    ||||| |||| |||||||||||||||||||| |||||||| ||||||||    
T  46164750 gatggagtggcggtggctcccccttgccaccacccagttccgccactga 46164798  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 14800345 - 14800404
Alignment:
Q  165 tttcacacaaaggatggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    ||||||| |||  |||||||||  |||||||||||||||||||||| ||||| |||||||    
T  14800345 tttcacataaataatggggtggctgtggctcccccttgccaccccctagttccgccactg 14800404  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 8433370 - 8433403
Alignment:
Q  177 gatggggtggtggtggctcccccttgccaccccc 210  Q
    |||||||||| |||||||||||||||||||||||    
T  8433370 gatggggtggcggtggctcccccttgccaccccc 8433403  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 44504382 - 44504341
Alignment:
Q  175 aggatggggtggtggtggctcccccttgccaccccccagttc 216  Q
    |||||||||||| |||||||||||||||||| |||| |||||    
T  44504382 aggatggggtggcggtggctcccccttgccaacccctagttc 44504341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 21421965 - 21421933
Alignment:
Q  178 atggggtggtggtggctcccccttgccaccccc 210  Q
    ||||||||| |||||||||||||||||||||||    
T  21421965 atggggtggcggtggctcccccttgccaccccc 21421933  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 47825637 - 47825605
Alignment:
Q  177 gatggggtggtggtggctcccccttgccacccc 209  Q
    |||||||||| ||||||||||||||||||||||    
T  47825637 gatggggtggcggtggctcccccttgccacccc 47825605  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 1667869 - 1667823
Alignment:
Q  178 atggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  1667869 atggggtggcggtggctcccccttgccaccccccagttccgccactg 1667823  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 16658574 - 16658528
Alignment:
Q  178 atggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||    
T  16658574 atggggtggcggtgtctcccccttgccaccccccagttccgccactg 16658528  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 33360160 - 33360101
Alignment:
Q  165 tttcacacaaaggatggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    ||||||| |||  ||||||||| ||||||||||||||||||||||| | ||| |||||||    
T  33360160 tttcacagaaataatggggtggcggtggctcccccttgccaccccctaattccgccactg 33360101  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 32381244 - 32381211
Alignment:
Q  177 gatggggtggtggtggctcccccttgccaccccc 210  Q
    |||||||||| |||||||||||||||||||||||    
T  32381244 gatggggtggcggtggctcccccttgccaccccc 32381211  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 32435199 - 32435166
Alignment:
Q  177 gatggggtggtggtggctcccccttgccaccccc 210  Q
    |||||||||| |||||||||||||||||||||||    
T  32435199 gatggggtggcggtggctcccccttgccaccccc 32435166  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 16497559 - 16497606
Alignment:
Q  177 gatggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||||    
T  16497559 gatggggtggcggtggctcccccttgccaccccgcagttccgccactg 16497606  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 7170775 - 7170730
Alignment:
Q  165 tttcacacaaaggatggggtggtggtggctcccccttgccaccccc 210  Q
    ||||||| |||  ||||||||| |||||||||||||||||||||||    
T  7170775 tttcacataaataatggggtggcggtggctcccccttgccaccccc 7170730  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 14125097 - 14125144
Alignment:
Q  177 gatggggtggtggtggctcccccttgccaccccccagttctgccactga 225  Q
    |||||||| | |||||||||||||||||| |||||||||| ||||||||    
T  14125097 gatggggtagcggtggctcccccttgcca-cccccagttccgccactga 14125144  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 38978988 - 38979022
Alignment:
Q  182 ggtggtggtggctcccccttgccaccccccagttc 216  Q
    |||||||||||||||||||||||||||||||||||    
T  38978988 ggtggtggtggctcccccttgccaccccccagttc 38979022  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 26014262 - 26014217
Alignment:
Q  177 gatggggtggtggtggctcccccttgccaccccccagttctgccac 222  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||    
T  26014262 gatggggtggcggtggctcccccttgccaccccccaattccgccac 26014217  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 18994627 - 18994659
Alignment:
Q  178 atggggtggtggtggctcccccttgccaccccc 210  Q
    ||||||||| |||||||||||||||||||||||    
T  18994627 atggggtggcggtggctcccccttgccaccccc 18994659  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 39382 - 39323
Alignment:
Q  165 tttcacacaaaggatggggtggtggtggctcccccttgccaccccccagttctgccactg 224  Q
    ||||||| |||  |||||||||  |||||||||||||||||||||| ||||| |||||||    
T  39382 tttcacataaataatggggtggctgtggctcccccttgccaccccctagttccgccactg 39323  T

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Target: scaffold1160 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 2214 - 2168
Alignment:
Q  175 aggatggggtggtggtggctcccccttgccaccccccagttctgcca 221  Q
    |||||||||||| |||||||||||||| |||||||| ||||| ||||    
T  2214 aggatggggtggcggtggctcccccttaccaccccctagttccgcca 2168  T

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