View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_low_17 (Length: 240)
Name: NF8727_low_17
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 52248714 - 52248869
Alignment:
| Q |
21 |
taattcaaggcatcctaatatttacagattcaaagaggtaagagttttattttttaaaaattgtttcttctttaggtttggaggggcatttcgaatgtaa |
120 |
Q |
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| T |
52248714 |
taattcaaggcatcctaatatttacagattcaaagaggtaagagttttattttttaaaaattgtttcttctttaggtttggaggggcatttcgaatgtaa |
52248813 |
T |
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| Q |
121 |
tatttggttatctgcattactttatgcattgctcactgatctcattttacacactt |
176 |
Q |
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| T |
52248814 |
tatttggttatctgcattactttatgcattgctcactgatctcattttacacactt |
52248869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 41124975 - 41125094
Alignment:
| Q |
27 |
aaggcatcctaatatttacagattcaaagaggtaagagttttattttttaaaaattgtttcttctttaggtttggaggggcatttcgaatgtaatatttg |
126 |
Q |
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| T |
41124975 |
aaggcatcctaatattatcagattcaaagaggtaacagtttttccttccttaaactgtttcttcattaggtttggaggggcattttgactgtagtatttg |
41125074 |
T |
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| Q |
127 |
gttatctgcattactttatg |
146 |
Q |
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||| |||||||||||||||| |
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| T |
41125075 |
gttttctgcattactttatg |
41125094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 52248917 - 52248964
Alignment:
| Q |
177 |
aatatctggtgttagctactatcattcaatggtatccaagcactctct |
224 |
Q |
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| T |
52248917 |
aatatctggtgttagctactatcattcaatggtatccaagcactctct |
52248964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 41118784 - 41118927
Alignment:
| Q |
27 |
aaggcatcctaatatttacagattcaaagaggtaagagttttattttttaaaaattgtttcttctttaggtttggaggggcatttcgaatgtaatatttg |
126 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||| | ||| ||| ||||||||| ||||||||| |||| |||| ||||| | |||||| |
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| T |
41118784 |
aaggcatcctaatattatcagattcaaagaggtaacagtttt-tctttcttaaactgtttcttcattaggtttgtagggccattatgaatgcagtatttg |
41118882 |
T |
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| Q |
127 |
gttatctgcattactttatgcattgctcactgatctcattttacacactt |
176 |
Q |
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| T |
41118883 |
gttatctgtattacttca-----tgcttactgctctcattttacacactt |
41118927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 41119665 - 41119700
Alignment:
| Q |
176 |
taatatctggtgttagctactatcattcaatggtat |
211 |
Q |
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| T |
41119665 |
taatatctggtgttagctactgtcattcaatggtat |
41119700 |
T |
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