View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_low_2 (Length: 632)
Name: NF8727_low_2
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 552
Target Start/End: Complemental strand, 503863 - 503327
Alignment:
| Q |
16 |
aactgggactagtttagaagttaaatgtgatttaagtgatttagttcgtttctcaatgatagaattattcaaatggtttggtgtttgaacattattgcaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
503863 |
aactgggactagtttagaagttaaatgtgatttaagtgatttagttcgtttctcaatgatagaattattcaaatggtttggtgtttgaacattattgcaa |
503764 |
T |
|
| Q |
116 |
gaaagtcgaggtagttgtttccgaatgttgccacgatagcaatctattaactatgtcatgaatcaatcattttaaacgcttaagtttttaggtgaaagac |
215 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
503763 |
gaaagtcgaggtagttgtttctgaatgttgccacgatagtaatctattaactatgtcatgaatcaatcattttaaacgcttaagtttttaggtgaaagac |
503664 |
T |
|
| Q |
216 |
atgattggttttatatctaacacattgctttatgtttgaatgcttatttgcagaatggaaattttcaaaacaattgtagaggtggtcagaattatatgcc |
315 |
Q |
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| T |
503663 |
atgattggttttatatctaacacattgcttcatgtttgaatgcttatttgcagaatggaaattttcaaaacaattgtagaggtggtcagaattatatgcc |
503564 |
T |
|
| Q |
316 |
attcaatgatttttgtcgggggcaatttaacttcaattaccaacaaagggtgacacaatatgctgataacatgcagttaccacatcatacgccgacagct |
415 |
Q |
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| T |
503563 |
attcaatgatttttgtcaggggcaatttaacttcaattaccaacaaagggtgatacaatatgctgataacatgcagttaccacatcaaacgtcgacagct |
503464 |
T |
|
| Q |
416 |
atttttcataataggcagttaacacatcaaatgctggtgccatatgttggtaacatacagttaccaaataaaacgctctcaccctttactgataacaggc |
515 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
503463 |
atttttcataataggcaggtaacacatcaaatgccggtgccatatgttggtaacatacagttgccaaataaaacgctgtcaccctttactgataacaggc |
503364 |
T |
|
| Q |
516 |
acttaccacatcaagcgctggcaccctatgcttataa |
552 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||| |
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| T |
503363 |
acttaccacatcaaatgctggcaccctatgctgataa |
503327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 527
Target Start/End: Complemental strand, 503372 - 503268
Alignment:
| Q |
423 |
ataataggcagttaacacatcaaatgctggtgccatatgttggtaacatacagttaccaaataaaacgctctcaccctttactgataacaggcacttacc |
522 |
Q |
| |
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|||| ||||| ||| ||||||||||||||| || |||| || ||| | ||| || ||| || ||||| | |||||||| ||||||||||||||||| | |
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| T |
503372 |
ataacaggcacttaccacatcaaatgctggcaccctatgctgataatagacactttccacatcaaacgatgccaccctttgctgataacaggcacttatc |
503273 |
T |
|
| Q |
523 |
acatc |
527 |
Q |
| |
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||||| |
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|
| T |
503272 |
acatc |
503268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 33 - 360
Target Start/End: Complemental strand, 11791687 - 11791360
Alignment:
| Q |
33 |
aagttaaatgtgatttaagtgatttagttcgtttctcaatgatagaattattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttg |
132 |
Q |
| |
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|||||||||||| ||| |||||||||||| |||||| ||| ||||||||||||||| || | || ||||||| |||||| |||||||||||| || ||| |
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| T |
11791687 |
aagttaaatgtggtttgagtgatttagtttgtttctgaatcgtagaattattcaaatagtatagtatttgaaccttattgtaagaaagtcgagatatttg |
11791588 |
T |
|
| Q |
133 |
tttccgaatgttgccacgatagcaatctattaactatgtcatgaatcaatcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatc |
232 |
Q |
| |
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||| ||||||||||| |||||| |||||| ||| ||| || ||||| | ||| ||||| ||||||| ||||||||||||||||||||||||| |||| |
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| T |
11791587 |
tttttgaatgttgccatgatagctatctatgcactgtgttataaatcacttgtttcaaacgtttaagttgttaggtgaaagacatgattggttttttatc |
11791488 |
T |
|
| Q |
233 |
taacacattgctttatgtttgaatgcttatttgcagaatggaaattttcaaaacaattgtagaggtggtcagaattatatgccattcaatgatttttgtc |
332 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||| |
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| T |
11791487 |
taactcattgcttcatgtttgaatgcttatttgcagaatggaaattttcaaaacaattatagaggtggttggaataatatgccattcaatgatttcagtc |
11791388 |
T |
|
| Q |
333 |
gggggcaatttaacttcaattaccaaca |
360 |
Q |
| |
|
|| || ||||||| |||||||||||| |
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| T |
11791387 |
aggaacagtttaactacaattaccaaca |
11791360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 79 - 358
Target Start/End: Complemental strand, 11783824 - 11783545
Alignment:
| Q |
79 |
attattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttccgaatgttgccacgatagcaatctattaactatgtcatgaat |
178 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||| ||||| |||||||| |||| ||||||||| ||||| ||||||| ||| ||||||||| |
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| T |
11783824 |
attattcaaatggtttagtatttgaaccttattgcaacaaagt--aggtagttatttctgaatgttgcgtcgatataaatctatgcactttgtcatgaac |
11783727 |
T |
|
| Q |
179 |
caatcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatctaacac--attgctttatgtttgaatgcttatttgcagaatggaaa |
276 |
Q |
| |
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|||| ||| || || |||||| |||| | |||| ||||||||| |||||| |||||| | ||||| |||||| |||| |||||||||||| |||| |
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| T |
11783726 |
caattgtttcgaatgcataagttgttagttaaaagttatgattggtattatatttaacactgactgcttcatgtttcaatgtgtatttgcagaatagaaa |
11783627 |
T |
|
| Q |
277 |
ttttcaaaacaattgtagaggtggtcagaattatatgccattcaatgatttttgtcgggggcaatttaacttcaattaccaa |
358 |
Q |
| |
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|||||||||| ||| |||||||||| |||| ||||||||||| |||||||| || || | || || |||| |||||||||| |
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|
| T |
11783626 |
ttttcaaaactattatagaggtggttggaatgatatgccattcgatgattttagttggagacagttcaactacaattaccaa |
11783545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 82 - 301
Target Start/End: Original strand, 15438167 - 15438385
Alignment:
| Q |
82 |
attcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttccgaatgttgccacgatagcaatctattaactatgtcatgaatcaa |
181 |
Q |
| |
|
|||| |||||||| ||| |||| | |||| |||||| |||||||| ||||||||| |||||||||| |||| | ||||||| | | ||||||||||||| |
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| T |
15438167 |
attctaatggtttcgtgcttgagccttatcgcaagagagtcgaggcagttgtttctgaatgttgccgtgatatcgatctattcattgtgtcatgaatcaa |
15438266 |
T |
|
| Q |
182 |
tcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatctaacacattgctttatgtttgaatgcttatttgcagaatggaaattttc |
281 |
Q |
| |
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| ||| ||| ||||||||| ||| || |||||||| | ||||||||||||||||| | || || | |||||||||||||||||||| ||| |||||| |
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| T |
15438267 |
ttgtttcaaatgcttaagttgttaagtcaaagacat-aatggttttatatctaacatactgtttcgtatttgaatgcttatttgcagataggagattttc |
15438365 |
T |
|
| Q |
282 |
aaaacaattgtagaggtggt |
301 |
Q |
| |
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||||||||| |||| ||||| |
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| T |
15438366 |
aaaacaattatagaagtggt |
15438385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 614
Target Start/End: Complemental strand, 11790712 - 11790602
Alignment:
| Q |
504 |
ctgataacaggcacttaccacatcaagcgctggcaccctatgcttataacatgcatttaccatatcaaacaccgataccctatgcttataacatgcactt |
603 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||| ||||||| |||||| | | || || |||||||||| |||||||||| |||||| || ||| |
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|
| T |
11790712 |
ctgataacaggtacttaccacatccagcgccggcacactatgctgataacaagtacttgacacatcaaacaccagcaccctatgctgataacaggccctt |
11790613 |
T |
|
| Q |
604 |
accacatcaaa |
614 |
Q |
| |
|
||||||||| |
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|
| T |
11790612 |
ggcacatcaaa |
11790602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 9095567 - 9095630
Alignment:
| Q |
78 |
aattattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttccgaat |
141 |
Q |
| |
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|||||||| |||||||| | |||||||| ||||||||||| ||| |||||||||| ||| |||| |
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|
| T |
9095567 |
aattattctaatggtttagagtttgaaccttattgcaagagagtagaggtagttgcttctgaat |
9095630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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