View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8727_low_22 (Length: 212)

Name: NF8727_low_22
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8727_low_22
NF8727_low_22
[»] chr3 (7 HSPs)
chr3 (18-188)||(24982042-24982212)
chr3 (18-188)||(24497275-24497445)
chr3 (19-188)||(25085035-25085204)
chr3 (18-188)||(24923476-24923646)
chr3 (19-188)||(31825573-31825742)
chr3 (18-188)||(24919902-24920072)
chr3 (19-188)||(21584613-21584782)
[»] chr7 (4 HSPs)
chr7 (19-188)||(10575384-10575553)
chr7 (25-188)||(39954861-39955024)
chr7 (19-164)||(354401-354547)
chr7 (19-128)||(10580784-10580893)
[»] chr2 (1 HSPs)
chr2 (46-188)||(41027596-41027738)
[»] chr8 (1 HSPs)
chr8 (19-188)||(14261048-14261217)
[»] chr4 (3 HSPs)
chr4 (40-188)||(22898571-22898719)
chr4 (40-188)||(22950239-22950387)
chr4 (25-164)||(53328717-53328856)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 24982042 - 24982212
Alignment:
Q  18 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982042 aagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 24982141  T
Q  118 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982142 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 24982212  T

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Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 24497445 - 24497275
Alignment:
Q  18 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  24497445 aagaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttaca 24497346  T
Q  118 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  24497345 tacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaag 24497275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 25085035 - 25085204
Alignment:
Q  19 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 118  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25085035 agaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacat 25085134  T
Q  119 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    ||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||    
T  25085135 acactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaag 25085204  T

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Target: chr3; HSP #4
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 24923646 - 24923476
Alignment:
Q  18 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||    
T  24923646 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgaca 24923547  T
Q  118 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    |||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||| |||||    
T  24923546 tacactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaag 24923476  T

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Target: chr3; HSP #5
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 31825742 - 31825573
Alignment:
Q  19 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 118  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  31825742 agaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacat 31825643  T
Q  119 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||    
T  31825642 acactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaag 31825573  T

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Target: chr3; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 24920072 - 24919902
Alignment:
Q  18 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 117  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||    
T  24920072 aagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgaca 24919973  T
Q  118 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    |||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| || |||||    
T  24919972 tacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaag 24919902  T

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Target: chr3; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 21584782 - 21584613
Alignment:
Q  19 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 118  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | ||||| |||||||||||||| || |||||||| ||||| |    
T  21584782 agaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgt 21584683  T
Q  119 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    |||||||||| || |||||||||||||| || || ||||||||||| |||||||||||||| ||||||||    
T  21584682 acactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaag 21584613  T

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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 10575384 - 10575553
Alignment:
Q  19 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 118  Q
    |||||||| ||||| || ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||  | ||||| ||||| |    
T  10575384 agaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttactt 10575483  T
Q  119 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    |||||||||| || |||||||| ||||| || || ||||||||||| || ||  | ||||||||||||||    
T  10575484 acactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaag 10575553  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 39955024 - 39954861
Alignment:
Q  25 ggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactg 124  Q
    |||||||| ||||||||||| ||| | ||||| ||||| ||  | |||||  | ||||||||  | |||||||| || |||||||| ||||| |||||||    
T  39955024 ggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactg 39954925  T
Q  125 agcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||||| | ||||| || |||||    
T  39954924 agcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 39954861  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 354401 - 354547
Alignment:
Q  19 agaagaggtggtgttaagagaatcagtggtttga-tctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 117  Q
    |||||||||||||| ||||| ||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| |||||     
T  354401 agaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttact 354500  T
Q  118 tacactgagcacgctaggaggaagactgttaccgccatggatgttgt 164  Q
    ||||||||||| || |||||||||||| | || || |||||||||||    
T  354501 tacactgagcatgcaaggaggaagactctgactgctatggatgttgt 354547  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 10580784 - 10580893
Alignment:
Q  19 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 118  Q
    ||||||| |||||| ||||| |||||||||||||||||||| ||||  |||||  | |||||||| |||||| |||||   || | |||||| ||||| |    
T  10580784 agaagagttggtgtgaagaggatcagtggtttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttactt 10580883  T
Q  119 acactgagca 128  Q
    ||||||||||    
T  10580884 acactgagca 10580893  T

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Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 41027596 - 41027738
Alignment:
Q  46 ggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactg 145  Q
    ||||||||||| ||||| ||  | || || ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| |||||||    
T  41027596 ggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactg 41027695  T
Q  146 ttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    |||| || ||||||||||| ||||| |||||||||||||||||    
T  41027696 ttactgctatggatgttgtttatgcattgaagagacaaggaag 41027738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 14261217 - 14261048
Alignment:
Q  19 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 118  Q
    |||||||| ||||| ||||||||||| || ||||| |||||||||||  | ||||| |||||||| |||||||||||||| ||  | ||||| ||||| |    
T  14261217 agaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgt 14261118  T
Q  119 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    | ||||| || || ||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||    
T  14261117 atactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag 14261048  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 22898571 - 22898719
Alignment:
Q  40 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 139  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||||||||||||||| ||||    
T  22898571 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22898670  T
Q  140 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    |||| ||||| || |||||||| || |||||  | |||||||| |||||    
T  22898671 agacggttactgctatggatgtggtttatgccctcaagagacagggaag 22898719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 22950239 - 22950387
Alignment:
Q  40 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 139  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||||||||||||||| ||||    
T  22950239 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22950338  T
Q  140 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 188  Q
    |||| ||||| || |||||||| || |||||  | |||||||| |||||    
T  22950339 agacggttactgctatggatgtggtttatgccctcaagagacagggaag 22950387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 53328717 - 53328856
Alignment:
Q  25 ggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactg 124  Q
    |||||||| ||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| || |||||||| || |||||||| |    
T  53328717 ggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacag 53328816  T
Q  125 agcacgctaggaggaagactgttaccgccatggatgttgt 164  Q
    |||| ||| |  | ||||||||||| || |||||||||||    
T  53328817 agcatgctcgccgtaagactgttactgcaatggatgttgt 53328856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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