View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_low_24 (Length: 205)
Name: NF8727_low_24
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 5522263 - 5522069
Alignment:
| Q |
3 |
ccagctcctacacgtaatgtctttggttaccaagttgagctacacttacatgacatggaatataatttaatgcttattaaaaaggagaaatgccaagtgc |
102 |
Q |
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| T |
5522263 |
ccagctcctacacgtaatgtctttggttaccaagttgagctacacttacatgacatggaatataatttaatgcttattaaaaaggagaaatgccaagtgc |
5522164 |
T |
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| Q |
103 |
actttagaaatcttacaagtcttttgtttattataaagataaagatgaattttttaaaaggtttttgagaggtgttgttatttaatttagtatta |
197 |
Q |
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| T |
5522163 |
actttagaaatcttacaagtcttttgtttattataaagataaagatggattttttttaaggtttttgagaggtgttgttatttaatttagtatta |
5522069 |
T |
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