View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8727_low_3 (Length: 599)
Name: NF8727_low_3
Description: NF8727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8727_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 50590648 - 50591017
Alignment:
| Q |
1 |
tcaaaaatgtgttgcttttagaagaatcatatggtcttggcattttttatttgctatatatgtacttattttcatgttgaatagaacctattcgatattg |
100 |
Q |
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| T |
50590648 |
tcaaaaatatgttgcttttagaagaatcatatggtcttggcattttttatttgctatatatgtgcttattttcatgttgaatagaacctatttgatattg |
50590747 |
T |
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| Q |
101 |
aaaacaaaattatcatgcagtgtagttgaggattcaacctatttgatttgttgccgatgacaattttggttctttaatatttgccatcaatatgattatt |
200 |
Q |
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| T |
50590748 |
aaaacaaaattatcatgcagtgtagttgaggattcaacctatttgatttgttgccggtgacaattttggttctttaatatttgccatcaatatgattatt |
50590847 |
T |
|
| Q |
201 |
ttcacttttgcaatgttaacgccttatgaatttccaatggttaaggccattgtttggaatggaaagaagcctcatagaagctaaaaggaatatttattta |
300 |
Q |
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| T |
50590848 |
ttcacttttgcaatgttaacgccttatgaatttccaatggttaaggccattggttggaatggaaagaagcctcatagaagctaaaaggaatatttattta |
50590947 |
T |
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| Q |
301 |
ctttcattcatttgttcattccttaattaactacttgtttgtttgccttctgtttatcactatttcctacagcatttta |
379 |
Q |
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| T |
50590948 |
ctttcattcatttg---------taattaactacttgtttgtttgccttctgtttatcactatttcctacagcatttta |
50591017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 377 - 583
Target Start/End: Original strand, 50591073 - 50591283
Alignment:
| Q |
377 |
ttaggtatgttatcggtaatcagctcattgctgtgctagcat-----aatcatccttattgctatgttaggttaattgtttttgaaagcaacaaccaaag |
471 |
Q |
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| T |
50591073 |
ttaggtatgttattggtaatcagctcattgctatgctagcatgattaaatcatccttattgctatgttaggttaattgtttttgaaagcaacaaccaaag |
50591172 |
T |
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| Q |
472 |
acatttagctggcaattttcgttaagagaatattaggcaccaaaactcaatccttttacggtttatctggttccattctgcacaacgttattagctaata |
571 |
Q |
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| T |
50591173 |
acatttagttggcaattttcgttaagagaatattaggcaccaaaactcaatcattttacggttta-ctggttccattctgcacaacgttattagctaata |
50591271 |
T |
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| Q |
572 |
aatgggtatatc |
583 |
Q |
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| T |
50591272 |
aatgggtatatc |
50591283 |
T |
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